HL_8CF5_064

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_064 not in the Motif Atlas

Geometric match to HL_1MFQ_002

Geometric discrepancy: 0.0993

The information below is about HL_1MFQ_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8CF5|1|AA|C|3025
8CF5|1|AA|G|3026
8CF5|1|AA|A|3027
8CF5|1|AA|G|3028
8CF5|1|AA|A|3029
8CF5|1|AA|G|3030

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain LL

RPL9A isoform 1

Chain Y

Ubiquitin-60S ribosomal protein L40