HL_8CF5_074
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GACUGAA(YYG)AUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: YYG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CF5_074 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.2961
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8CF5|1|Bb|G|30
8CF5|1|Bb|A|31
8CF5|1|Bb|C|32
8CF5|1|Bb|U|33
8CF5|1|Bb|G|34
8CF5|1|Bb|A|35
8CF5|1|Bb|A|36
8CF5|1|Bb|YYG|37
8CF5|1|Bb|A|38
8CF5|1|Bb|U|39
8CF5|1|Bb|C|40
Current chains
- Chain Bb
- Transfer RNA Phe
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Aa
- Elongation factor 2
- Chain Dd
- Messenger RNA
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
- Chain z
- 40S ribosomal protein S23-A
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