3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
CACAUUG
Length
7 nucleotides
Bulged bases
8CF5|1|CC|A|111, 8CF5|1|CC|U|113
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CF5_077 not in the Motif Atlas
Homologous match to HL_5TBW_075
Geometric discrepancy: 0.0916
The information below is about HL_5TBW_075
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_22523.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

8CF5|1|CC|C|108
8CF5|1|CC|A|109
8CF5|1|CC|C|110
8CF5|1|CC|A|111
8CF5|1|CC|U|112
8CF5|1|CC|U|113
8CF5|1|CC|G|114

Current chains

Chain CC
5.8S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain J
60S ribosomal protein L25
Chain V
60S ribosomal protein L37-A
Chain X
60S ribosomal protein L39

Coloring options:


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