HL_8CF5_080
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CF5_080 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.1036
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8CF5|1|Cc|G|32
8CF5|1|Cc|C|33
8CF5|1|Cc|U|34
8CF5|1|Cc|C|35
8CF5|1|Cc|A|36
8CF5|1|Cc|U|37
8CF5|1|Cc|A|38
8CF5|1|Cc|A|39
8CF5|1|Cc|C|40
Current chains
- Chain Cc
- Transfer RNA fMet
Nearby chains
- Chain Dd
- Messenger RNA
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
- Chain s
- 40S ribosomal protein S16-A
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