HL_8CF5_083

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CAAUACAG

Length

8 nucleotides

Bulged bases

8CF5|1|c|U|77, 8CF5|1|c|A|80

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_083 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1313

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8CF5|1|c|C|70
8CF5|1|c|A|71
8CF5|1|c|A|72
8CF5|1|c|U|77
8CF5|1|c|A|78
8CF5|1|c|C|79
8CF5|1|c|A|80
8CF5|1|c|G|81

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain j

40S ribosomal protein S6-A