3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
UCA
Length
3 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CF5_085 not in the Motif Atlas
Geometric match to HL_8H9D_001
Geometric discrepancy: 0.1473
The information below is about HL_8H9D_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.1
Basepair signature
cWW-F
Number of instances in this motif group
8

Unit IDs

8CF5|1|c|U|185
8CF5|1|c|C|186
8CF5|1|c|A|200

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain l
40S ribosomal protein S8-B

Coloring options:


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