HL_8CF5_089
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CF5_089 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.1226
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8CF5|1|c|U|368
8CF5|1|c|A|369
8CF5|1|c|A|370
8CF5|1|c|G|371
8CF5|1|c|G|372
8CF5|1|c|G|373
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain f
- 40S ribosomal protein S2
- Chain m
- 40S ribosomal protein S9-A
- Chain o
- 40S ribosomal protein S11-A
- Chain y
- 40S ribosomal protein S22-A
- Chain z
- 40S ribosomal protein S23-A
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