HL_8CF5_092

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8CF5|1|c|A|452, 8CF5|1|c|U|454, 8CF5|1|c|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_092 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2283

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8CF5|1|c|U|450
8CF5|1|c|A|451
8CF5|1|c|A|452
8CF5|1|c|U|453
8CF5|1|c|U|454
8CF5|1|c|C|455
8CF5|1|c|A|456

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain h

40S ribosomal protein S4-A