HL_8CF5_113

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8CF5|1|AA|C|648

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_113 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0741

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8CF5|1|AA|U|640
8CF5|1|AA|C|641
8CF5|1|AA|U|642
8CF5|1|AA|U|643
8CF5|1|AA|G|644
8CF5|1|AA|1MA|645
8CF5|1|AA|A|646
8CF5|1|AA|A|647
8CF5|1|AA|C|648
8CF5|1|AA|A2M|649

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain M

60S ribosomal protein L28

Chain Q

60S ribosomal protein L32