HL_8CF5_114

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

(A2M)CGUGCAAAU

Length

10 nucleotides

Bulged bases

8CF5|1|AA|U|879, 8CF5|1|AA|A|883, 8CF5|1|AA|A|884

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_114 not in the Motif Atlas

Homologous match to HL_8P9A_132

Geometric discrepancy: 0.0859

The information below is about HL_8P9A_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8CF5|1|AA|A2M|876
8CF5|1|AA|C|877
8CF5|1|AA|G|878
8CF5|1|AA|U|879
8CF5|1|AA|G|880
8CF5|1|AA|C|881
8CF5|1|AA|A|882
8CF5|1|AA|A|883
8CF5|1|AA|A|884
8CF5|1|AA|U|885

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3

Chain V

60S ribosomal protein L37-A