HL_8CF8_003

3D structure

PDB id

8CF8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eravacycline bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

8CF8|1|A|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF8_003 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3598

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

8CF8|1|A|C|1027
8CF8|1|A|C|1028
8CF8|1|A|U|1029
8CF8|1|A|U|1030
8CF8|1|A|C|1031
8CF8|1|A|G|1032
8CF8|1|A|G|1033
8CF8|1|A|G|1034

Current chains

Chain A

16S rRNA

Nearby chains