HL_8CG8_094

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8CG8|1|c|A|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CG8_094 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3341

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8CG8|1|c|U|450
8CG8|1|c|A|451
8CG8|1|c|A|452
8CG8|1|c|U|453
8CG8|1|c|U|454
8CG8|1|c|C|455
8CG8|1|c|A|456

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain h

40S ribosomal protein S4-A