HL_8CGD_016

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

UUAG

Length

4 nucleotides

Bulged bases

8CGD|1|a|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGD_016 not in the Motif Atlas

Homologous match to HL_7A0S_017

Geometric discrepancy: 0.3289

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8CGD|1|a|U|545
8CGD|1|a|U|546
8CGD|1|a|A|547
8CGD|1|a|G|548

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

Large ribosomal subunit protein bL21