HL_8CGD_047

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

8CGD|1|a|A|1913, 8CGD|1|a|C|1914

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGD_047 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.3092

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8CGD|1|a|G|1910
8CGD|1|a|PSU|1911
8CGD|1|a|A|1912
8CGD|1|a|A|1913
8CGD|1|a|C|1914
8CGD|1|a|3TD|1915
8CGD|1|a|A|1916
8CGD|1|a|PSU|1917
8CGD|1|a|A|1918
8CGD|1|a|A|1919
8CGD|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains