HL_8CGD_048

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8CGD|1|a|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGD_048 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0448

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8CGD|1|a|G|1949
8CGD|1|a|G|1950
8CGD|1|a|U|1951
8CGD|1|a|A|1952
8CGD|1|a|A|1953
8CGD|1|a|G|1954
8CGD|1|a|U|1955
8CGD|1|a|U|1956
8CGD|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

Large ribosomal subunit protein uL14