HL_8CGD_053
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8CGD|1|a|A|2268, 8CGD|1|a|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CGD_053 not in the Motif Atlas
- Homologous match to HL_5J7L_187
- Geometric discrepancy: 0.0517
- The information below is about HL_5J7L_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8CGD|1|a|C|2264
8CGD|1|a|U|2265
8CGD|1|a|A|2266
8CGD|1|a|A|2267
8CGD|1|a|A|2268
8CGD|1|a|G|2269
8CGD|1|a|A|2270
8CGD|1|a|G|2271
8CGD|1|a|U|2272
8CGD|1|a|A|2273
8CGD|1|a|A|2274
8CGD|1|a|C|2275
8CGD|1|a|G|2276
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL27
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