HL_8CGD_054

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGD_054 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.0969

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8CGD|1|a|G|2303
8CGD|1|a|G|2304
8CGD|1|a|U|2305
8CGD|1|a|C|2306
8CGD|1|a|G|2307
8CGD|1|a|G|2308
8CGD|1|a|A|2309
8CGD|1|a|C|2310
8CGD|1|a|A|2311
8CGD|1|a|U|2312
8CGD|1|a|C|2313

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

Large ribosomal subunit protein uL5