HL_8CGD_055

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGD_055 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.0836

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8CGD|1|a|U|2324
8CGD|1|a|G|2325
8CGD|1|a|C|2326
8CGD|1|a|A|2327
8CGD|1|a|A|2328
8CGD|1|a|U|2329
8CGD|1|a|G|2330
8CGD|1|a|G|2331

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27