HL_8CGD_065
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8CGD|1|a|G|2751, 8CGD|1|a|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CGD_065 not in the Motif Atlas
- Homologous match to HL_5J7L_199
- Geometric discrepancy: 0.0506
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8CGD|1|a|C|2745
8CGD|1|a|U|2746
8CGD|1|a|G|2747
8CGD|1|a|A|2748
8CGD|1|a|A|2749
8CGD|1|a|A|2750
8CGD|1|a|G|2751
8CGD|1|a|C|2752
8CGD|1|a|A|2753
8CGD|1|a|U|2754
8CGD|1|a|C|2755
8CGD|1|a|U|2756
8CGD|1|a|A|2757
8CGD|1|a|A|2758
8CGD|1|a|G|2759
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain g
- Large ribosomal subunit protein uL6
- Chain i
- Large ribosomal subunit protein uL13
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