HL_8CGI_008

3D structure

PDB id

8CGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pentacycline TP038 bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGI_008 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.0907

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8CGI|1|A|C|1265
8CGI|1|A|G|1266
8CGI|1|A|C|1267
8CGI|1|A|G|1268
8CGI|1|A|A|1269
8CGI|1|A|G|1270

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13

Chain S

Small ribosomal subunit protein uS19