HL_8CGI_009
3D structure
- PDB id
- 8CGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pentacycline TP038 bound to the 30S head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.89 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CGI_009 not in the Motif Atlas
- Homologous match to HL_5J7L_028
- Geometric discrepancy: 0.0694
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8CGI|1|A|C|1314
8CGI|1|A|U|1315
8CGI|1|A|G|1316
8CGI|1|A|C|1317
8CGI|1|A|A|1318
8CGI|1|A|A|1319
8CGI|1|A|C|1320
8CGI|1|A|U|1321
8CGI|1|A|C|1322
8CGI|1|A|G|1323
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL31A
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14
- Chain S
- Small ribosomal subunit protein uS19
Coloring options: