3D structure

PDB id
8CGJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
1.79 Å

Loop

Sequence
GGUAACGGC
Length
9 nucleotides
Bulged bases
8CGJ|1|A|G|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CGJ_005 not in the Motif Atlas
Homologous match to HL_5J7L_006
Geometric discrepancy: 0.057
The information below is about HL_5J7L_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_84299.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

8CGJ|1|A|G|259
8CGJ|1|A|G|260
8CGJ|1|A|U|261
8CGJ|1|A|A|262
8CGJ|1|A|A|263
8CGJ|1|A|C|264
8CGJ|1|A|G|265
8CGJ|1|A|G|266
8CGJ|1|A|C|267

Current chains

Chain A
16S rRNA

Nearby chains

Chain Q
Small ribosomal subunit protein uS17
Chain T
30S ribosomal protein S20

Coloring options:


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