HL_8CGJ_007

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGJ_007 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0659

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8CGJ|1|A|A|320
8CGJ|1|A|A|321
8CGJ|1|A|C|322
8CGJ|1|A|U|323
8CGJ|1|A|G|324
8CGJ|1|A|A|325
8CGJ|1|A|G|326
8CGJ|1|A|A|327
8CGJ|1|A|C|328
8CGJ|1|A|A|329
8CGJ|1|A|C|330
8CGJ|1|A|G|331
8CGJ|1|A|G|332
8CGJ|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20