HL_8CGJ_023

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

8CGJ|1|a|A|1913, 8CGJ|1|a|C|1914, 8CGJ|1|a|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGJ_023 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.0503

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8CGJ|1|a|G|1910
8CGJ|1|a|PSU|1911
8CGJ|1|a|A|1912
8CGJ|1|a|A|1913
8CGJ|1|a|C|1914
8CGJ|1|a|3TD|1915
8CGJ|1|a|A|1916
8CGJ|1|a|PSU|1917
8CGJ|1|a|A|1918
8CGJ|1|a|A|1919
8CGJ|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA