HL_8CGK_050

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

ACAUGU

Length

6 nucleotides

Bulged bases

8CGK|1|a|U|2192

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGK_050 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3667

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

8CGK|1|a|A|2095
8CGK|1|a|C|2096
8CGK|1|a|A|2097
8CGK|1|a|U|2192
8CGK|1|a|G|2193
8CGK|1|a|U|2194

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9