HL_8CGK_057

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8CGK|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGK_057 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.053

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8CGK|1|a|U|2404
8CGK|1|a|G|2405
8CGK|1|a|A|2406
8CGK|1|a|A|2407
8CGK|1|a|U|2408
8CGK|1|a|G|2409
8CGK|1|a|G|2410
8CGK|1|a|A|2411
8CGK|1|a|A|2412
8CGK|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15