HL_8CGN_008

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

8CGN|1|AA|G|283, 8CGN|1|AA|A|284, 8CGN|1|AA|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.0513

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8CGN|1|AA|U|278
8CGN|1|AA|U|279
8CGN|1|AA|U|280
8CGN|1|AA|G|281
8CGN|1|AA|G|282
8CGN|1|AA|G|283
8CGN|1|AA|A|284
8CGN|1|AA|A|285
8CGN|1|AA|U|286
8CGN|1|AA|G|287

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L28

Chain OO

60S ribosomal protein L13-A

Chain QQ

60S ribosomal protein L15-A

Chain a

60S ribosomal protein L42-A