HL_8CGN_034

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CUGAUUUUAUGCAGG

Length

15 nucleotides

Bulged bases

8CGN|1|AA|U|1569

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_034 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2951

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8CGN|1|AA|C|1563
8CGN|1|AA|U|1564
8CGN|1|AA|G|1565
8CGN|1|AA|A|1566
8CGN|1|AA|U|1567
8CGN|1|AA|U|1568
8CGN|1|AA|U|1569
8CGN|1|AA|U|1570
8CGN|1|AA|A|1571
8CGN|1|AA|U|1572
8CGN|1|AA|G|1573
8CGN|1|AA|C|1574
8CGN|1|AA|A|1575
8CGN|1|AA|G|1576
8CGN|1|AA|G|1577

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain J

60S ribosomal protein L25