HL_8CGN_089

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

8CGN|1|c|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_089 not in the Motif Atlas

Homologous match to HL_8C3A_198

Geometric discrepancy: 0.4704

The information below is about HL_8C3A_198

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_46878.1

Basepair signature

cWW-F

Number of instances in this motif group

30

Unit IDs

8CGN|1|c|C|275
8CGN|1|c|C|276
8CGN|1|c|U|277
8CGN|1|c|U|278
8CGN|1|c|G|279
8CGN|1|c|U|280
8CGN|1|c|G|281

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain j

40S ribosomal protein S6-A