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Motif HL_46878.1 Version HL_46878.1 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_6CZR_2346CZR0.56732Mini UNCG1a SSU rRNAC208U210G212ncWW
2 HL_4KR9_0014KR90.36473Mini UNCGMRNA (39-MER)G10U13C15ncWW
3 HL_4LFB_0184LFB0.23482Mini UNCGA SSU rRNAG838C840C848ncWW
4 HL_2B3J_0032B3J0.25693Mini UNCG with extended bulgeGanticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)C32G36G37cWW
5 HL_4L8H_0014L8H0.23962Mini UNCGRRNA operator hairpinC9A11G13cWW
6 HL_8P9A_1968P9A0.28301Mini UNCGsR SSU rRNAC276U278G279cWW
7 HL_5SWD_0055SWD0.20283Mini UNCGBPurine riboswitchU47C50A52cWW
8 HL_7A0S_0177A0S0.18993Mini UNCG with extended bulgeX LSU rRNAC553U557G558cWW
9 HL_4V9F_0414V9F0.14712Mini UNCG0 LSU rRNAC1651U1654G1655cWW
10 HL_7A0S_0397A0S0.23831Mini UNCGX LSU rRNAC1581A1583G1584cWW
11 HL_9DFE_0379DFE0.20131Mini UNCG1A LSU rRNAC1565A1567G1568cWW
12 HL_5J7L_1725J7L0.20841Mini UNCGDA LSU rRNAC1565G1567G1568cWW
13 HL_5VW1_0025VW10.14861Mini UNCGCsgRNAC55A57G58cWW
14 HL_4ZT0_0054ZT00.11521Mini UNCGDsingle-guide RNAC55A57G58cWW
15 HL_2F8K_0012F8K0.12441Mini UNCGBRNA (16-mer)U6G8A9cWW
16 HL_8P9A_1518P9A0.00002Mini UNCGAR LSU rRNAC1792U1795G1796cWW
17 HL_8VMB_0028VMB0.19211Mini UNCGRRNA (83-MER)C37C39G40cWW
18 HL_8VMA_0028VMA0.14211Mini UNCGCRNA (88-MER)C37C39G40cWW
19 HL_6MSF_0016MSF0.13952Mini UNCGRRNA (14-mer)G6||||P_1C8||||P_1C10||||P_1cWW
20 HL_6MSF_0026MSF0.17362Mini UNCGSRNA (10-mer)G6||||P_1C8||||P_1C10||||P_1cWW
21 HL_5J7L_2045J7L0.18322Mini UNCGDB 5S rRNAG86C88C90cWW
22 HL_8DP3_0028DP30.16712Mini UNCGRRNA (90-MER)C39U41G43cWW
23 HL_8P9A_1828P9A0.15531Mini UNCGAR LSU rRNAC3350U3352G3353cWW
24 HL_8C3A_1988C3A0.22981Mini UNCGCM SSU rRNAC274U276G277cWW
25 HL_5AH5_0075AH50.26862Mini UNCGD tRNAC46|||AC46|||CG46|||EcWW
26 HL_4V9F_0214V9F0.25282Mini UNCG0 LSU rRNAC712U714G716cWW
27 HL_6CZR_0896CZR0.32502Mini UNCG1a SSU rRNAG822C824C826cWW
28 HL_4LFB_0054LFB0.43862Mini UNCGA SSU rRNAC201U203G216cWW
29 HL_4YAZ_0044YAZ0.35502Mini UNCGRCyclic di-GMP-I riboswitchC56C58G60cWW
30 HL_4WF9_0374WF90.43701Mini UNCGX LSU rRNAC1612A1614G1615cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUUG3
GUCUC3
CUUG3
CAAG2
CUAG2
CACG2
GUCAC2
GUGUCC1
CUCGG1
CUAAG1
UUUCUA1
CUUAUG1
CCAUG1
CAGG1
UUGA1
CCGUG1
CAUUG1
CUCUG1
CCCUG1
CGAG1
Non-Watson-Crick part of the motif
SequenceCounts
UCU4
UUU3
UU3
AA2
UA2
AC2
UCA2
UGUC1
U(P5P)CG1
UAA1
UUCU1
UUAU1
CAU1
AG1
UG1
CGU1
AUU1
CCU1
GA1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusNew id, 2 parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Mini UNCG (28)
  • Mini UNCG with extended bulge (2)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.09 | Avg 0.32 | Max 0.94
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