HL_8CGN_110

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8CGN|1|c|U|1398, 8CGN|1|c|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_110 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2837

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8CGN|1|c|U|1396
8CGN|1|c|U|1397
8CGN|1|c|U|1398
8CGN|1|c|C|1399
8CGN|1|c|A|1400
8CGN|1|c|A|1401
8CGN|1|c|G|1402

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 4

40S ribosomal protein S28-A

Chain t

40S ribosomal protein S17-A