HL_8CGN_116

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8CGN|1|AA|C|648

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_116 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0606

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8CGN|1|AA|U|640
8CGN|1|AA|C|641
8CGN|1|AA|U|642
8CGN|1|AA|U|643
8CGN|1|AA|G|644
8CGN|1|AA|1MA|645
8CGN|1|AA|A|646
8CGN|1|AA|A|647
8CGN|1|AA|C|648
8CGN|1|AA|A2M|649

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain M

60S ribosomal protein L28

Chain Q

60S ribosomal protein L32