HL_8CGN_123

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

8CGN|1|c|A|416

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_123 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1383

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8CGN|1|c|OMC|414
8CGN|1|c|C|415
8CGN|1|c|A|416
8CGN|1|c|A|417
8CGN|1|c|G|418
8CGN|1|c|G|419

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain H

60S ribosomal protein L23-A

Chain j

40S ribosomal protein S6-A