3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
AACUGAGACACGGU
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CGR_008 not in the Motif Atlas
Homologous match to HL_5J7L_008
Geometric discrepancy: 0.0689
The information below is about HL_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81205.3
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8CGR|1|A|A|320
8CGR|1|A|A|321
8CGR|1|A|C|322
8CGR|1|A|U|323
8CGR|1|A|G|324
8CGR|1|A|A|325
8CGR|1|A|G|326
8CGR|1|A|A|327
8CGR|1|A|C|328
8CGR|1|A|A|329
8CGR|1|A|C|330
8CGR|1|A|G|331
8CGR|1|A|G|332
8CGR|1|A|U|333

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain T
30S ribosomal protein S20

Coloring options:


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