HL_8CGU_006

3D structure

PDB id

8CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gentamicin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8CGU|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGU_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.049

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8CGU|1|A|G|259
8CGU|1|A|G|260
8CGU|1|A|U|261
8CGU|1|A|A|262
8CGU|1|A|A|263
8CGU|1|A|C|264
8CGU|1|A|G|265
8CGU|1|A|G|266
8CGU|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

30S ribosomal protein S20