HL_8CGU_008

3D structure

PDB id

8CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gentamicin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGU_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0659

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8CGU|1|A|A|320
8CGU|1|A|A|321
8CGU|1|A|C|322
8CGU|1|A|U|323
8CGU|1|A|G|324
8CGU|1|A|A|325
8CGU|1|A|G|326
8CGU|1|A|A|327
8CGU|1|A|C|328
8CGU|1|A|A|329
8CGU|1|A|C|330
8CGU|1|A|G|331
8CGU|1|A|G|332
8CGU|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20