HL_8CGU_014

3D structure

PDB id

8CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gentamicin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGU_014 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.0675

The information below is about HL_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8CGU|1|A|G|617
8CGU|1|A|C|618
8CGU|1|A|U|619
8CGU|1|A|C|620
8CGU|1|A|A|621
8CGU|1|A|A|622
8CGU|1|A|C|623

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

30S ribosomal protein S16