HL_8CGV_011

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8CGV|1|a|G|329, 8CGV|1|a|A|330, 8CGV|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGV_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0635

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8CGV|1|a|G|327
8CGV|1|a|U|328
8CGV|1|a|G|329
8CGV|1|a|A|330
8CGV|1|a|C|331
8CGV|1|a|A|332
8CGV|1|a|G|333
8CGV|1|a|C|334
8CGV|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24