HL_8CGV_061

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8CGV|1|a|G|2751, 8CGV|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGV_061 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0514

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8CGV|1|a|C|2745
8CGV|1|a|U|2746
8CGV|1|a|G|2747
8CGV|1|a|A|2748
8CGV|1|a|A|2749
8CGV|1|a|A|2750
8CGV|1|a|G|2751
8CGV|1|a|C|2752
8CGV|1|a|A|2753
8CGV|1|a|U|2754
8CGV|1|a|C|2755
8CGV|1|a|U|2756
8CGV|1|a|A|2757
8CGV|1|a|A|2758
8CGV|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13