HL_8CGV_065

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

CGCAG

Length

5 nucleotides

Bulged bases

8CGV|1|b|A|66

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGV_065 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2199

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8CGV|1|b|C|17
8CGV|1|b|G|18
8CGV|1|b|C|19
8CGV|1|b|A|66
8CGV|1|b|G|67

Current chains

Chain b

5S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA