HL_8CIV_001
3D structure
- PDB id
- 8CIV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 8CIV|1|AA|A|40
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CIV_001 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.1081
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8CIV|1|AA|U|38
8CIV|1|AA|A|39
8CIV|1|AA|A|40
8CIV|1|AA|G|41
8CIV|1|AA|C|42
8CIV|1|AA|A|43
8CIV|1|AA|U|44
8CIV|1|AA|A|45
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain M
- 60S ribosomal protein L28
- Chain OO
- 60S ribosomal protein L13-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L42-A
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