RNA 3D Hub //

8CIV Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8CIV_0011/AA/38:45No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_8CIV_0021/AA/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_8CIV_0031/AA/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_8CIV_0041/AA/132:136No text annotation
homologous
HL_8C3A_004
NA
HL_8CIV_0051/AA/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8CIV_0061/AA/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_8CIV_0071/AA/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8CIV_0081/AA/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_8CIV_0091/AA/303:312Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8CIV_0101/AA/357:362GNRA
homologous
HL_8C3A_010
NA
HL_8CIV_0111/AA/382:387GNRA
homologous
HL_8C3A_011
NA
HL_8CIV_1151/AA/542:549No text annotation
homologous
HL_8P9A_124
NA
HL_8CIV_0121/AA/544:548No text annotation
HL_8CIV_0131/AA/599:604GNRA
homologous
HL_5TBW_013
NA
HL_8CIV_1161/AA/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8CIV_0151/AA/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_8CIV_0161/AA/707:712GNRA
homologous
HL_8C3A_016
NA
HL_8CIV_0171/AA/732:737GNRA
homologous
HL_5TBW_017
NA
HL_8CIV_0181/AA/763:768No text annotation
geometric
HL_5TBW_018
NA
HL_8CIV_0191/AA/844:849GNRA
homologous
HL_8C3A_019
NA
HL_8CIV_1171/AA/876:885No text annotation
homologous
HL_8C3A_020
NA
HL_8CIV_0211/AA/910:918No text annotation
homologous
HL_8C3A_021
NA
HL_8CIV_0221/AA/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_8CIV_0231/AA/1023:1029GNRA
homologous
HL_5TBW_023
NA
HL_8CIV_0241/AA/1076:1083No text annotation
homologous
HL_5TBW_024
NA
HL_8CIV_0251/AA/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_8CIV_0261/AA/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_8CIV_0271/AA/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_8CIV_0281/AA/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8CIV_0291/AA/1347:1357Mini UNCG
geometric
HL_4OOG_001
HL_56334.1
HL_8CIV_0301/AA/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_8CIV_0311/AA/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8CIV_0321/AA/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_8CIV_0331/AA/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_8CIV_1181/AA/1561:1579No text annotation
HL_8CIV_0341/AA/1562:1577No text annotation
HL_8CIV_0351/AA/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_8CIV_0361/AA/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_8CIV_0371/AA/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_8CIV_0381/AA/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_8CIV_0391/AA/1760:1765GNRA related
homologous
HL_5TBW_039
NA
HL_8CIV_0401/AA/1792:1796Mini UNCG
homologous
HL_5TBW_040
NA
HL_8CIV_0411/AA/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_8CIV_0421/AA/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_8CIV_0431/AA/1923:1928UNCG
geometric
HL_4V9F_044
HL_34617.5
HL_8CIV_0451/AA/2110:2114No text annotation
homologous
HL_8C3A_045
NA
HL_8CIV_0461/AA/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_8CIV_0471/AA/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_8CIV_1191/AA/2220:2225GNRA
homologous
HL_8P9A_159
HL_37824.8
HL_8CIV_0491/AA/2253:2263No text annotation
homologous
HL_8C3A_049
NA
HL_8CIV_0501/AA/2292:2300No text annotation
homologous
HL_8C3A_050
NA
HL_8CIV_0511/AA/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_8CIV_0521/AA/2469:2476No text annotation
homologous
HL_8C3A_052
NA
HL_8CIV_0531/AA/2533:2546No text annotation
HL_8CIV_0541/AA/2568:2573UNCG
geometric
HL_5J7L_030
HL_34617.5
HL_8CIV_0551/AA/2616:2624No text annotation
homologous
HL_8C3A_055
NA
HL_8CIV_0561/AA/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_8CIV_0571/AA/2673:2681No text annotation
homologous
HL_5TBW_056
NA
HL_8CIV_0581/AA/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_8CIV_1211/AA/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_8CIV_0601/AA/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_8CIV_0611/AA/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_8CIV_0621/AA/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_8CIV_0631/AA/2897:2904No text annotation
homologous
HL_5TBW_062
NA
HL_8CIV_0641/AA/2920:2926No text annotation
homologous
HL_8C3A_064
NA
HL_8CIV_0651/AA/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_8CIV_0661/AA/3025:3030GNRA
homologous
HL_5TBW_065
NA
HL_8CIV_0671/AA/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8CIV_0681/AA/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_8CIV_0691/AA/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_8CIV_0701/AA/3240:3247No text annotation
homologous
HL_8P9A_180
HL_07886.3
HL_8CIV_0711/AA/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_8CIV_0721/AA/3350:3353Mini UNCG
homologous
HL_8C3A_072
NA
HL_8CIV_1221/BB/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8CIV_0731/BB/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_8CIV_0741/BB/88:93GNRA
homologous
HL_5TBW_186
NA
HL_8CIV_0751/Bb/13:22tRNA D-loop
homologous
HL_4V90_032
HL_20811.4
HL_8CIV_0761/Bb/31:39tRNA anticodon loop
homologous
HL_6UFG_007
HL_06059.7
HL_8CIV_0771/Bb/51:63No text annotation
homologous
HL_5EL4_250
NA
HL_8CIV_1231/CC/47:56No text annotation
homologous
HL_8P9A_186
HL_93438.2
HL_8CIV_0781/CC/69:89No text annotation
homologous
HL_8P4V_073
NA
HL_8CIV_0791/CC/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_8CIV_0801/CC/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_8CIV_0811/Cc/13:23No text annotation
homologous
HL_3KFU_004
NA
HL_8CIV_0821/Cc/32:40tRNA anticodon loop
homologous
HL_5IBB_210
HL_06059.7
HL_8CIV_0831/Cc/53:63No text annotation
homologous
HL_5EL4_223
NA
HL_8CIV_0841/c/7:17No text annotation
homologous
HL_4V88_186
NA
HL_8CIV_0861/c/154:160GNRA related
homologous
HL_4V88_188
NA
HL_8CIV_0881/c/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_8CIV_0891/c/276:279No text annotation
geometric
HL_5TBW_068
NA
HL_8CIV_0901/c/330:338GNRA related
homologous
HL_4V88_193
NA
HL_8CIV_0911/c/368:373No text annotation
homologous
HL_4V88_194
NA
HL_8CIV_0921/c/393:404No text annotation
homologous
HL_4V88_195
NA
HL_8CIV_1241/c/414:419UNCG
homologous
HL_8C3A_202
NA
HL_8CIV_0941/c/450:456No text annotation
homologous
HL_4V88_197
NA
HL_8CIV_0951/c/520:532No text annotation
homologous
HL_4V88_199
NA
HL_8CIV_0961/c/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_8CIV_0971/c/764:772No text annotation
homologous
HL_4V88_203
NA
HL_8CIV_0981/c/777:783No text annotation
homologous
HL_4V88_204
NA
HL_8CIV_0991/c/900:909No text annotation
homologous
HL_4V88_206
NA
HL_8CIV_1001/c/937:942GNRA
homologous
HL_4V88_207
NA
HL_8CIV_1251/c/997:1007No text annotation
homologous
HL_8C3A_213
NA
HL_8CIV_1021/c/1055:1064No text annotation
HL_8CIV_1031/c/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_8CIV_1261/c/1121:1126GNRA
homologous
HL_8C3A_216
NA
HL_8CIV_1051/c/1188:1197No text annotation
homologous
HL_8P9A_215
HL_50779.4
HL_8CIV_1061/c/1238:1247Anticodon loop related
homologous
HL_4V88_213
NA
HL_8CIV_1071/c/1296:1301GNRA
homologous
HL_4V88_214
NA
HL_8CIV_1081/c/1309:1316No text annotation
homologous
HL_4V88_215
NA
HL_8CIV_1091/c/1359:1364No text annotation
homologous
HL_8C3A_221
NA
HL_8CIV_1101/c/1396:1402GNRA related
geometric
HL_5J7L_179
HL_04783.2
HL_8CIV_1111/c/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_8CIV_1121/c/1550:1561No text annotation
homologous
HL_4V88_219
NA
HL_8CIV_1131/c/1594:1602No text annotation
homologous
HL_4V88_220
NA
HL_8CIV_1141/c/1778:1783GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_8CIV_014No text annotation
HL_8CIV_020No text annotation
HL_8CIV_044No text annotation
HL_8CIV_048No text annotation
HL_8CIV_120No text annotation
HL_8CIV_059No text annotation
HL_8CIV_085No text annotation
HL_8CIV_087Externally structured
HL_8CIV_093No text annotation
HL_8CIV_101No text annotation
HL_8CIV_104GNRA with extra cWW

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8CIV_0021/AA/7:8,
1/CC/150:152		Single bulged C
geometric
IL_5TBW_002
NA
IL_8CIV_0031/AA/13:15,
1/CC/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_8CIV_0041/AA/27:28,
1/AA/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_8CIV_0051/AA/31:38,
1/AA/45:53		tSH-tHW-tHH-tHS
homologous
IL_5TBW_005
NA
IL_8CIV_0061/AA/82:89,
1/AA/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_8CIV_0071/AA/123:124,
1/AA/144:149		No text annotation
geometric
IL_5TBW_007
NA
IL_8CIV_0081/AA/125:127,
1/AA/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_8CIV_0091/AA/163:165,
1/AA/257:258		Single stack bend
homologous
IL_5TBW_009
NA
IL_8CIV_0101/AA/169:172,
1/AA/247:253		No text annotation
IL_8CIV_0111/AA/172:173,
1/AA/245:247		Single stack bend
geometric
IL_5TBW_070
NA
IL_8CIV_0121/AA/177:178,
1/AA/238:241		Major groove platform
geometric
IL_7A0S_073
IL_48076.6
IL_8CIV_0131/AA/189:191,
1/AA/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_8CIV_0141/AA/337:339,
1/CC/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_8CIV_0151/AA/376:379,
1/AA/390:403		No text annotation
homologous
IL_8C3A_015
NA
IL_8CIV_0161/AA/404:410,
1/CC/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_8CIV_0171/AA/429:431,
1/AA/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_8CIV_0191/AA/512:513,
1/AA/577:579		Single bulged A
homologous
IL_5TBW_018
NA
IL_8CIV_0201/AA/517:525,
1/AA/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_8CIV_0211/AA/531:538,
1/AA/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_8CIV_0221/AA/542:544,
1/AA/548:549		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_8CIV_0231/AA/668:670,
1/AA/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_8CIV_0241/AA/680:684,
1/AA/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_8CIV_0251/AA/725:728,
1/AA/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_8CIV_0261/AA/752:753,
1/AA/779:781		Single bulged A
homologous
IL_8C3A_026
NA
IL_8CIV_0271/AA/755:756,
1/AA/775:777		Single bulged U
homologous
IL_5TBW_025
NA
IL_8CIV_0281/AA/758:763,
1/AA/768:773		No text annotation
homologous
IL_8C3A_028
NA
IL_8CIV_2471/AA/803:805,
1/AA/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8CIV_2481/AA/805:809,
1/AA/931:938		No text annotation
homologous
IL_8P9A_256
IL_54041.2
IL_8CIV_0311/AA/828:829,
1/AA/895:897		Single bulged A
geometric
IL_7A0S_016
IL_31462.7
IL_8CIV_0321/AA/833:834,
1/AA/859:861		Single bulged G
homologous
IL_8C3A_032
NA
IL_8CIV_0331/AA/834:838,
1/AA/855:859		Triple sheared
geometric
IL_5J7L_263
IL_50730.2
IL_8CIV_0341/AA/869:872,
1/AA/888:890		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8CIV_0351/AA/873:875,
1/AA/886:887		Single bulged U
homologous
IL_8C3A_035
NA
IL_8CIV_0361/AA/907:909,
1/AA/919:923		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_8CIV_0371/AA/954:956,
1/AA/965:967		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_8CIV_0381/AA/969:970,
1/AA/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_8CIV_0391/AA/977:982,
1/AA/1101:1104		No text annotation
IL_8CIV_0401/AA/983:985,
1/AA/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_8CIV_0411/AA/991:997,
1/AA/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5TBW_038
NA
IL_8CIV_0421/AA/997:998,
1/AA/1050:1052		Minor groove platform
geometric
IL_6DLR_003
IL_51454.3
IL_8CIV_0431/AA/999:1004,
1/AA/1046:1049		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_8CIV_0441/AA/1006:1009,
1/AA/1041:1044		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_8CIV_0451/AA/1009:1011,
1/AA/1039:1041		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_8CIV_0461/AA/1014:1018,
1/AA/1034:1036		Isolated non-canonical cWW with bulges
geometric
IL_3KTW_002
NA
IL_8CIV_0481/AA/1069:1071,
1/AA/1087:1089		Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_8CIV_0491/AA/1074:1076,
1/AA/1083:1084		Single bulged A
geometric
IL_5TBW_045
NA
IL_8CIV_0501/AA/1120:1122,
1/AA/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8CIV_0521/AA/1167:1171,
1/AA/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8CIV_0531/AA/1173:1180,
1/AA/1325:1326		SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_8CIV_0541/AA/1180:1182,
1/AA/1324:1325		Single bulged U
geometric
IL_5TBW_050
NA
IL_8CIV_0551/AA/1187:1194,
1/AA/1314:1319		No text annotation
geometric
IL_5TBW_051
NA
IL_8CIV_0561/AA/1194:1205,
1/AA/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_8CIV_0571/AA/1207:1209,
1/AA/1296:1297		Single bulged U
homologous
IL_8C3A_056
NA
IL_8CIV_0581/AA/1218:1226,
1/AA/1283:1287		Kink-turn
homologous
IL_8C3A_057
NA
IL_8CIV_0591/AA/1234:1238,
1/AA/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_8CIV_0601/AA/1262:1266,
1/AA/1275:1277		Major groove platform with extra cWW
geometric
IL_5D8H_003
IL_51387.3
IL_8CIV_0611/AA/1376:1378,
1/AA/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_8CIV_0621/AA/1385:1387,
1/AA/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_8CIV_0631/AA/1388:1395,
1/AA/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_8CIV_0641/AA/1398:1400,
1/AA/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_8CIV_2501/AA/1444:1450,
1/AA/2354:2359		7x6 Sarcin-Ricin; G-bulge
homologous
IL_8P9A_289
IL_26307.2
IL_8CIV_2511/AA/1501:1505,
1/AA/1513:1515		C-loop
homologous
IL_8P9A_290
IL_63596.11
IL_8CIV_0671/AA/1532:1536,
1/AA/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8CIV_0681/AA/1561:1562,
1/AA/1577:1579		Single stack bend
geometric
IL_4V9F_005
IL_90729.1
IL_8CIV_0691/AA/1618:1621,
1/AA/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_8CIV_0701/AA/1623:1624,
1/AA/1819:1822		Multiple bulged bases
geometric
IL_4YAZ_007
IL_82107.5
IL_8CIV_0711/AA/1627:1631,
1/AA/1811:1816		No text annotation
homologous
IL_5TBW_066
NA
IL_8CIV_0721/AA/1645:1649,
1/AA/1806:1810		Triple sheared
homologous
IL_8C3A_073
NA
IL_8CIV_0731/AA/1661:1663,
1/AA/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_8CIV_0741/AA/1669:1670,
1/AA/1778:1780		Single bulged C
homologous
IL_5TBW_069
NA
IL_8CIV_0751/AA/1670:1671,
1/AA/1776:1778		Single stack bend
geometric
IL_5TBW_070
NA
IL_8CIV_0761/AA/1694:1698,
1/AA/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_8CIV_0771/AA/1702:1707,
1/AA/1737:1743		No text annotation
homologous
IL_5TBW_072
NA
IL_8CIV_0781/AA/1711:1717,
1/AA/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_8CIV_0791/AA/1883:1889,
1/AA/2346:2349		No text annotation
homologous
IL_5TBW_074
NA
IL_8CIV_0801/AA/1895:1897,
1/AA/2338:2340		Isolated tWW turn
geometric
IL_4WF9_063
IL_67095.2
IL_8CIV_2521/AA/1898:1901,
1/AA/2336:2337		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_8CIV_2531/AA/1898:1906,
1/AA/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_8CIV_0821/AA/1901:1906,
1/AA/2333:2336		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_8CIV_0831/AA/1918:1923,
1/AA/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_8CIV_0841/AA/1940:1942,
1/AA/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8CIV_0851/AA/1947:1948,
1/AA/2098:2101		No text annotation
homologous
IL_8C3A_086
NA
IL_8CIV_0861/AA/2128:2129,
1/AA/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_8CIV_0871/AA/2156:2161,
1/AA/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_8CIV_0881/AA/2196:2199,
1/AA/2245:2246		No text annotation
homologous
IL_8C3A_089
NA
IL_8CIV_0891/AA/2200:2201,
1/AA/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_8CIV_0901/AA/2204:2206,
1/AA/2237:2238		Single stack bend
homologous
IL_8C3A_091
NA
IL_8CIV_0911/AA/2206:2210,
1/AA/2235:2237		Minor groove platform with extra cWW
geometric
IL_4WF9_003
IL_90351.1
IL_8CIV_0921/AA/2211:2217,
1/AA/2228:2234		No text annotation
homologous
IL_8C3A_093
NA
IL_8CIV_0931/AA/2276:2277,
1/AA/2307:2310		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_8CIV_2541/AA/2277:2288,
1/AA/2304:2307		No text annotation
homologous
IL_8C3A_095
NA
IL_8CIV_0951/AA/2391:2394,
1/AA/2986:2988		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_8CIV_0961/AA/2396:2398,
1/AA/2981:2984		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_8CIV_0971/AA/2409:2411,
1/AA/2811:2812		Single bulged U
homologous
IL_5TBW_093
NA
IL_8CIV_0981/AA/2412:2413,
1/AA/2807:2810		Minor groove platform
homologous
IL_8C3A_099
NA
IL_8CIV_1001/AA/2423:2425,
1/AA/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_8CIV_1011/AA/2444:2448,
1/AA/2499:2503		No text annotation
homologous
IL_8C3A_102
NA
IL_8CIV_1031/AA/2452:2459,
1/AA/2487:2495		No text annotation
IL_8CIV_2561/AA/2452:2469,
1/AA/2476:2495		No text annotation
IL_8CIV_1041/AA/2459:2469,
1/AA/2476:2487		No text annotation
IL_8CIV_1051/AA/2520:2526,
1/AA/2584:2587		No text annotation
homologous
IL_8C3A_106
NA
IL_8CIV_1061/AA/2614:2615,
1/AA/2625:2627		Single bulged A
homologous
IL_5TBW_098
NA
IL_8CIV_1071/AA/2666:2668,
1/AA/2686:2690		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_8CIV_1081/AA/2714:2716,
1/AA/2740:2741		Single bulged A
geometric
IL_5WWT_001
IL_31462.7
IL_8CIV_1091/AA/2718:2721,
1/AA/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_8CIV_1111/AA/2770:2773,
1/AA/2787:2788		Single stack bend
homologous
IL_8C3A_110
NA
IL_8CIV_1121/AA/2823:2824,
1/AA/2865:2867		Major groove platform
geometric
IL_5TBW_102
NA
IL_8CIV_2571/AA/2823:2826,
1/AA/2863:2867		No text annotation
homologous
IL_8C3A_111
NA
IL_8CIV_1131/AA/2824:2826,
1/AA/2863:2865		Isolated non-canonical cWW pair
homologous
IL_5TBW_103
NA
IL_8CIV_1141/AA/2826:2828,
1/AA/2862:2863		Major groove platform
geometric
IL_5TBW_104
NA
IL_8CIV_1151/AA/2828:2830,
1/AA/2858:2862		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_8CIV_1161/AA/2835:2839,
1/AA/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_8CIV_1171/AA/2876:2877,
1/AA/2949:2951		Major groove platform
homologous
IL_8C3A_115
NA
IL_8CIV_1191/AA/2879:2881,
1/AA/2943:2947		No text annotation
homologous
IL_8C3A_116
NA
IL_8CIV_1201/AA/2881:2882,
1/AA/2940:2943		No text annotation
homologous
IL_8C3A_117
NA
IL_8CIV_1211/AA/2889:2891,
1/AA/2912:2914		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8CIV_2581/AA/2889:2892,
1/AA/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_8CIV_1221/AA/2891:2892,
1/AA/2909:2912		Major groove platform with intercalation
geometric
IL_5TBW_111
NA
IL_8CIV_1231/AA/2918:2920,
1/AA/2926:2928		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_8CIV_1251/AA/2960:2961,
1/AA/2970:2972		Single bulged A
geometric
IL_7RQB_101
NA
IL_8CIV_1261/AA/3004:3007,
1/AA/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_8CIV_1271/AA/3012:3014,
1/AA/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_8CIV_2591/AA/3019:3025,
1/AA/3030:3035		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_4V9F_092
IL_26307.2
IL_8CIV_1291/AA/3047:3051,
1/AA/3091:3094		Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_8CIV_1301/AA/3054:3059,
1/AA/3084:3088		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_8CIV_1311/AA/3063:3064,
1/AA/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_8CIV_1321/AA/3103:3107,
1/AA/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8CIV_1331/AA/3164:3166,
1/AA/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_8CIV_1341/AA/3168:3170,
1/AA/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_8CIV_1351/AA/3177:3179,
1/AA/3210:3211		Single bulged A
homologous
IL_5TBW_123
NA
IL_8CIV_1361/AA/3179:3188,
1/AA/3204:3210		No text annotation
geometric
IL_5TBW_124
NA
IL_8CIV_1371/AA/3193:3194,
1/AA/3197:3199		Single bulged U
geometric
IL_5TBW_125
NA
IL_8CIV_1381/AA/3225:3229,
1/AA/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_8CIV_1391/AA/3233:3235,
1/AA/3252:3254		Isolated non-canonical cWW pair
geometric
IL_5TBW_127
NA
IL_8CIV_1401/AA/3235:3238,
1/AA/3249:3252		Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_8CIV_1411/AA/3300:3303,
1/AA/3311:3314		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_8CIV_1421/AA/3318:3320,
1/AA/3387:3388		Single bulged U
geometric
IL_5TBW_130
NA
IL_8CIV_1431/AA/3324:3325,
1/AA/3381:3383		Single bulged U
homologous
IL_5TBW_131
NA
IL_8CIV_1441/AA/3328:3330,
1/AA/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_8CIV_1451/AA/3332:3337,
1/AA/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_8CIV_1461/AA/3340:3342,
1/AA/3363:3364		Single bulged U
homologous
IL_8C3A_140
NA
IL_8CIV_1471/AA/3342:3345,
1/AA/3360:3363		Double sheared
geometric
IL_4V9F_100
IL_09705.15
IL_8CIV_1481/BB/15:16,
1/BB/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_8CIV_1491/BB/21:27,
1/BB/53:58		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_8CIV_1501/BB/28:29,
1/BB/49:52		Minor groove platform
geometric
IL_5TBW_374
NA
IL_8CIV_1511/BB/29:30,
1/BB/47:49		Single stack bend
homologous
IL_5TBW_375
NA
IL_8CIV_1521/BB/32:36,
1/BB/41:45		Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_8CIV_1531/BB/72:80,
1/BB/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_8CIV_1541/BB/84:87,
1/BB/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_8CIV_1551/CC/44:64,
1/CC/96:100		No text annotation
geometric
IL_5TBW_144
NA
IL_8CIV_1561/CC/64:66,
1/CC/93:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8CIV_1571/CC/68:69,
1/CC/89:91		Single bulged U
geometric
IL_5TBW_146
NA
IL_8CIV_1581/c/24:26,
1/c/600:601		Single bulged C
homologous
IL_4V88_384
NA
IL_8CIV_1601/c/35:37,
1/c/471:473		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_8CIV_1611/c/37:41,
1/c/466:471		Triple sheared related
geometric
IL_4V88_386
NA
IL_8CIV_1621/c/42:48,
1/c/431:433		No text annotation
homologous
IL_4V88_387
NA
IL_8CIV_1631/c/50:52,
1/c/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_8CIV_1641/c/58:63,
1/c/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_8CIV_1651/c/64:69,
1/c/82:86		No text annotation
homologous
IL_4V88_390
NA
IL_8CIV_1661/c/109:112,
1/c/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_8CIV_1671/c/113:116,
1/c/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_8CIV_1681/c/117:122,
1/c/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_8CIV_1691/c/142:149,
1/c/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_8CIV_1701/c/150:152,
1/c/162:164		Isolated cWH basepair
geometric
IL_6RA4_002
IL_10167.6
IL_8CIV_1711/c/204:206,
1/c/259:263		Major groove platform with extra cWW
homologous
IL_4V88_397
NA
IL_8CIV_1721/c/206:208,
1/c/257:259		Isolated non-canonical cWW pair
geometric
IL_4V88_398
NA
IL_8CIV_1741/c/270:273,
1/c/283:285		No text annotation
homologous
IL_4V88_400
NA
IL_8CIV_1751/c/275:276,
1/c/279:281		Single bulged U
geometric
IL_5TBW_146
NA
IL_8CIV_1761/c/311:316,
1/c/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_8CIV_1771/c/318:323,
1/c/345:346		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_8CIV_1781/c/363:365,
1/c/376:381		No text annotation
homologous
IL_4V88_404
NA
IL_8CIV_1791/c/389:391,
1/c/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_8CIV_2601/c/411:413,
1/c/420:422		Isolated non-canonical cWW pair
homologous
IL_8C3A_414
NA
IL_8CIV_1801/c/439:441,
1/c/463:464		Single bulged U
homologous
IL_4V88_407
NA
IL_8CIV_1811/c/443:447,
1/c/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_8CIV_1821/c/447:448,
1/c/458:460		Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_8CIV_2611/c/481:482,
1/c/505:507		Single bulged A
homologous
IL_8P9A_399
IL_31462.7
IL_8CIV_1841/c/514:516,
1/c/536:543		No text annotation
homologous
IL_8C3A_420
NA
IL_8CIV_2621/c/514:518,
1/c/533:543		No text annotation
IL_8CIV_1851/c/516:518,
1/c/533:536		Minor groove platform with extra cWW
geometric
IL_4V88_411
NA
IL_8CIV_1861/c/518:520,
1/c/532:533		Minor groove platform
geometric
IL_4V88_412
NA
IL_8CIV_1871/c/550:557,
1/c/587:588		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_8CIV_1881/c/557:559,
1/c/586:587		Single bulged U
homologous
IL_4V88_414
NA
IL_8CIV_2631/c/562:568,
1/c/575:583		No text annotation
homologous
IL_8P9A_404
IL_54177.4
IL_8CIV_1901/c/616:622,
1/c/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_8CIV_1911/c/624:626,
1/c/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_8CIV_1921/c/627:631,
1/c/968:972		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_8CIV_1941/c/646:648,
1/c/686:688		Isolated non-canonical cWW pair
homologous
IL_4V88_419
NA
IL_8CIV_1951/c/746:747,
1/c/802:805		Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_8CIV_1961/c/748:750,
1/c/799:801		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_8CIV_1971/c/751:759,
1/c/791:798		No text annotation
homologous
IL_8C3A_503
NA
IL_8CIV_1981/c/819:822,
1/c/850:852		Isolated non-canonical cWW pair
homologous
IL_4V88_426
NA
IL_8CIV_1991/c/865:866,
1/c/962:965		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_8CIV_2001/c/868:870,
1/c/957:960		Isolated non-canonical cWW pair
geometric
IL_5UNE_004
IL_57744.1
IL_8CIV_2641/c/871:873,
1/c/954:956		Isolated non-canonical cWW pair
geometric
IL_2R8S_001
IL_87907.2
IL_8CIV_2021/c/874:878,
1/c/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_8CIV_2031/c/885:888,
1/c/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_8CIV_2041/c/893:899,
1/c/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_8CIV_2051/c/985:990,
1/c/1014:1016		Other IL
geometric
IL_4V88_435
NA
IL_8CIV_2061/c/990:994,
1/c/1010:1014		tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_8CIV_2071/c/1034:1036,
1/c/1095:1101		No text annotation
homologous
IL_4V88_437
NA
IL_8CIV_2081/c/1041:1044,
1/c/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_8CIV_2091/c/1051:1053,
1/c/1066:1067		Single bulged U
homologous
IL_4V88_439
NA
IL_8CIV_2101/c/1111:1118,
1/c/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_8CIV_2111/c/1146:1147,
1/c/1630:1632		Single bulged A
homologous
IL_4V88_441
NA
IL_8CIV_2121/c/1149:1151,
1/c/1627:1628		Single bulged G
homologous
IL_4V88_442
NA
IL_8CIV_2131/c/1157:1160,
1/c/1617:1621		C-loop
geometric
IL_1KOG_007
IL_63596.11
IL_8CIV_2141/c/1173:1175,
1/c/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_8CIV_2151/c/1178:1179,
1/c/1459:1461		Minor groove platform
homologous
IL_4V88_445
NA
IL_8CIV_2161/c/1213:1215,
1/c/1448:1450		Isolated cWH basepair
geometric
IL_3FOZ_001
NA
IL_8CIV_2171/c/1224:1233,
1/c/1252:1259		No text annotation
IL_8CIV_2181/c/1234:1236,
1/c/1249:1251		No text annotation
homologous
IL_4V88_448
NA
IL_8CIV_2191/c/1268:1270,
1/c/1440:1441		Single bulged U
homologous
IL_4V88_449
NA
IL_8CIV_2201/c/1272:1276,
1/c/1436:1438		Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_8CIV_2651/c/1272:1278,
1/c/1430:1438		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_8CIV_2211/c/1276:1278,
1/c/1430:1436		Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_8CIV_2221/c/1280:1281,
1/c/1426:1428		Single bulged A
homologous
IL_4V88_452
NA
IL_8CIV_2231/c/1290:1292,
1/c/1323:1325		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_8CIV_2241/c/1306:1308,
1/c/1317:1318		Minor groove platform
homologous
IL_4V88_454
NA
IL_8CIV_2251/c/1339:1342,
1/c/1383:1385		Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_8CIV_2261/c/1345:1348,
1/c/1377:1380		Minor groove platform
homologous
IL_4V88_456
NA
IL_8CIV_2271/c/1352:1358,
1/c/1365:1373		No text annotation
IL_8CIV_2281/c/1389:1391,
1/c/1407:1412		No text annotation
homologous
IL_8C3A_465
NA
IL_8CIV_2301/c/1480:1487,
1/c/1519:1527		No text annotation
geometric
IL_4V88_459
NA
IL_8CIV_2311/c/1488:1494,
1/c/1513:1518		180 degree turn
homologous
IL_4V88_460
NA
IL_8CIV_2321/c/1495:1498,
1/c/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_8CIV_2331/c/1540:1545,
1/c/1566:1571		No text annotation
homologous
IL_4V88_462
NA
IL_8CIV_2341/c/1636:1638,
1/c/1764:1767		No text annotation
homologous
IL_4V88_463
NA
IL_8CIV_2351/c/1638:1641,
1/c/1760:1764		No text annotation
geometric
IL_4V88_464
NA
IL_8CIV_2361/c/1642:1644,
1/c/1757:1759		Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_8CIV_2371/c/1644:1647,
1/c/1753:1757		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_85033.2
IL_8CIV_2381/c/1650:1652,
1/c/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_8CIV_2391/c/1653:1656,
1/c/1744:1747		Double sheared
geometric
IL_4V88_468
NA
IL_8CIV_2401/c/1656:1658,
1/c/1743:1744		Single bulged U
homologous
IL_4V88_469
NA
IL_8CIV_2411/c/1665:1667,
1/c/1734:1736		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_8CIV_2421/c/1669:1672,
1/c/1729:1732		Double sheared
geometric
IL_4V88_471
NA
IL_8CIV_2431/c/1672:1674,
1/c/1727:1729		Isolated non-canonical cWW pair
homologous
IL_4V88_472
NA
IL_8CIV_2441/c/1675:1678,
1/c/1723:1726		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_8CIV_2451/c/1678:1682,
1/c/1719:1723		Triple sheared
homologous
IL_4V88_474
NA

Problematic loops

#loop idProblemSequence
IL_8CIV_001No text annotation
IL_8CIV_018No text annotation
IL_8CIV_029No text annotation
IL_8CIV_030Isolated non-canonical cWW pair
IL_8CIV_047Isolated non-canonical cWW pair
IL_8CIV_051Tandem non-canonical cWW pairs
IL_8CIV_249No text annotation
IL_8CIV_0658x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
IL_8CIV_066No text annotation
IL_8CIV_081Major groove platform with extra pair
IL_8CIV_094No text annotation
IL_8CIV_099Stack and bulge
IL_8CIV_255Isolated non-canonical cWW pair
IL_8CIV_102Tandem non-canonical cWW pairs
IL_8CIV_110Isolated non-canonical cWW pair
IL_8CIV_118No text annotation
IL_8CIV_124No text annotation
IL_8CIV_1288x7 Sarcin-Ricin; G-bulge
IL_8CIV_159Isolated non-canonical cWW pair
IL_8CIV_173Isolated tHS basepair with bulges
IL_8CIV_183Isolated non-canonical cWW pair
IL_8CIV_189No text annotation
IL_8CIV_193Isolated cWH basepair
IL_8CIV_201Tandem non-canonical cWW pairs
IL_8CIV_229Isolated non-canonical cWW pair
IL_8CIV_266No text annotation
IL_8CIV_246Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8CIV_0011/AA/113:123,
1/AA/149:158,
1/AA/263:267		No text annotation
homologous
J3_8C3A_001
NA
J3_8CIV_0231/AA/113:124,
1/AA/144:158,
1/AA/263:267		No text annotation
J3_8CIV_0241/AA/185:189,
1/AA/205:214,
1/AA/226:231		No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_8CIV_0251/AA/340:356,
1/AA/363:368,
1/CC/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_8CIV_0261/AA/369:376,
1/AA/403:404,
1/CC/19:20		No text annotation
geometric
J3_8C3A_048
NA
J3_8CIV_0271/AA/369:379,
1/AA/390:404,
1/CC/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_8CIV_0281/AA/502:503,
1/AA/588:597,
1/AA/606:611		No text annotation
homologous
J3_8P9A_048
J3_83726.1
J3_8CIV_0021/AA/814:820,
1/AA/905:907,
1/AA/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_8CIV_0291/AA/829:831,
1/AA/863:867,
1/AA/892:895		No text annotation
homologous
J3_8C3A_004
NA
J3_8CIV_0301/AA/986:987,
1/AA/1062:1066,
1/AA/1092:1098		No text annotation
homologous
J3_8C3A_051
NA
J3_8CIV_0041/AA/1230:1232,
1/AA/1256:1262,
1/AA/1277:1279		No text annotation
homologous
J3_5TBW_007
NA
J3_8CIV_0051/AA/1479:1485,
1/AA/1857:1859,
1/AA/1871:1874		No text annotation
homologous
J3_5TBW_008
NA
J3_8CIV_0061/AA/1488:1491,
1/AA/1837:1843,
1/AA/1852:1854		No text annotation
homologous
J3_8C3A_007
NA
J3_8CIV_0311/AA/1526:1531,
1/AA/1591:1595,
1/AA/1612:1613		No text annotation
homologous
J3_8P9A_055
J3_31965.2
J3_8CIV_0321/AA/1537:1542,
1/AA/1551:1561,
1/AA/1579:1584		No text annotation
J3_8CIV_0331/AA/1631:1632,
1/AA/1641:1645,
1/AA/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_8CIV_0341/AA/1654:1658,
1/AA/1791:1792,
1/AA/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_8CIV_0071/AA/2432:2435,
1/AA/2512:2517,
1/AA/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_8CIV_0081/AA/2529:2532,
1/AA/2547:2563,
1/AA/2578:2581		No text annotation
homologous
J3_8C3A_009
NA
J3_8CIV_0351/AA/2651:2653,
1/AA/2754:2765,
1/AA/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_8CIV_0101/AA/2664:2666,
1/AA/2690:2692,
1/AA/2701:2706		No text annotation
homologous
J3_8C3A_010
NA
J3_8CIV_0111/AA/2886:2889,
1/AA/2914:2916,
1/AA/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_8CIV_0361/AA/3171:3176,
1/AA/3212:3220,
1/AA/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_8CIV_0121/AA/3298:3300,
1/AA/3314:3318,
1/AA/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_8CIV_0371/BB/9:14,
1/BB/66:67,
1/BB/111:112		No text annotation
homologous
J3_8P9A_066
J3_12003.2
J3_8CIV_0381/CC/44:45,
1/CC/58:64,
1/CC/96:100		No text annotation
homologous
J3_8P9A_067
J3_35667.2
J3_8CIV_0391/c/41:42,
1/c/433:439,
1/c/464:466		No text annotation
geometric
J3_8C3A_082
NA
J3_8CIV_0401/c/41:48,
1/c/431:439,
1/c/464:466		No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_8CIV_0411/c/633:635,
1/c/861:865,
1/c/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_8CIV_0421/c/633:635,
1/c/861:866,
1/c/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_8CIV_0131/c/760:763,
1/c/773:775,
1/c/785:790		No text annotation
homologous
J3_4V88_032
NA
J3_8CIV_0141/c/881:884,
1/c/928:936,
1/c/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_8CIV_0151/c/1037:1039,
1/c/1079:1083,
1/c/1090:1094		No text annotation
homologous
J3_4V88_034
NA
J3_8CIV_0161/c/1161:1164,
1/c/1581:1587,
1/c/1609:1616		No text annotation
J3_8CIV_0171/c/1168:1171,
1/c/1468:1470,
1/c/1574:1577		No text annotation
homologous
J3_4V88_036
NA
J3_8CIV_0181/c/1180:1187,
1/c/1198:1209,
1/c/1454:1458		No text annotation
homologous
J3_8C3A_040
NA
J3_8CIV_0191/c/1215:1222,
1/c/1261:1267,
1/c/1442:1448		No text annotation
J3_8CIV_0201/c/1283:1288,
1/c/1327:1332,
1/c/1419:1424		No text annotation
homologous
J3_4V88_039
NA
J3_8CIV_0441/c/1293:1294,
1/c/1303:1306,
1/c/1318:1322		No text annotation
homologous
J3_8C3A_085
NA
J3_8CIV_0211/c/1336:1338,
1/c/1386:1389,
1/c/1412:1415		No text annotation
homologous
J3_8C3A_043
NA
J3_8CIV_0451/c/1336:1338,
1/c/1386:1391,
1/c/1407:1415		No text annotation
homologous
J3_8C3A_086
NA
J3_8CIV_0221/c/1470:1474,
1/c/1533:1540,
1/c/1571:1574		No text annotation
homologous
J3_8C3A_044
NA
J4_8CIV_0011/AA/112:113,
1/AA/267:272,
1/AA/293:299,
1/AA/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_8CIV_0021/AA/185:189,
1/AA/205:208,
1/AA/212:214,
1/AA/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_8CIV_0031/AA/1451:1457,
1/AA/1475:1476,
1/AA/1877:1880,
1/AA/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_8CIV_0041/AA/1492:1496,
1/AA/1520:1525,
1/AA/1614:1615,
1/AA/1829:1836		No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_8CIV_0051/AA/1674:1675,
1/AA/1693:1694,
1/AA/1752:1753,
1/AA/1772:1773		No text annotation
homologous
J4_8P9A_016
J4_24280.2
J4_8CIV_0061/AA/2130:2134,
1/AA/2146:2150,
1/AA/2186:2190,
1/AA/2317:2322		No text annotation
homologous
J4_8C3A_006
NA
J4_8CIV_0071/AA/2192:2194,
1/AA/2248:2249,
1/AA/2267:2276,
1/AA/2310:2315		No text annotation
homologous
J4_8C3A_007
NA
J4_8CIV_0081/AA/2654:2658,
1/AA/2712:2714,
1/AA/2741:2742,
1/AA/2751:2753		No text annotation
J4_8CIV_0091/AA/3010:3012,
1/AA/3042:3043,
1/AA/3098:3100,
1/AA/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_8CIV_0101/Bb/7:10,
1/Bb/25:27,
1/Bb/43:49,
1/Bb/65:66		tRNA junction
homologous
J4_6CFJ_015
J4_70449.29
J4_8CIV_0111/Cc/7:10,
1/Cc/26:28,
1/Cc/44:50,
1/Cc/66:67		tRNA junction
homologous
J4_5E81_027
J4_70449.29
J4_8CIV_0121/c/99:107,
1/c/307:309,
1/c/357:361,
1/c/383:384		No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_8CIV_0131/c/137:141,
1/c/173:182,
1/c/203:204,
1/c/263:266		No text annotation
J4_8CIV_0141/c/622:624,
1/c/975:980,
1/c/1021:1032,
1/c/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J5_8CIV_0011/AA/20:22,
1/CC/35:42,
1/CC/102:107,
1/CC/115:116,
1/CC/137:139		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_8CIV_0021/AA/658:663,
1/AA/799:802,
1/AA/941:944,
1/AA/1375:1376,
1/AA/1431:1437		No text annotation
homologous
J5_8C3A_002
NA
J5_8CIV_0031/AA/675:678,
1/AA/702:706,
1/AA/713:721,
1/AA/749:751,
1/AA/782:787		No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_8CIV_0041/AA/1906:1914,
1/AA/1938:1939,
1/AA/2109:2110,
1/AA/2114:2122,
1/AA/2331:2333		No text annotation
homologous
J5_8C3A_004
NA
J5_8CIV_0051/AA/2399:2406,
1/AA/2815:2823,
1/AA/2867:2876,
1/AA/2951:2957,
1/AA/2975:2980		No text annotation
J5_8CIV_0061/AA/2416:2419,
1/AA/2611:2614,
1/AA/2627:2628,
1/AA/2650:2651,
1/AA/2798:2804		No text annotation
homologous
J5_8C3A_006
NA
J5_8CIV_0071/c/31:35,
1/c/473:479,
1/c/509:514,
1/c/543:546,
1/c/592:595		No text annotation
homologous
J5_8C3A_018
NA
J5_8CIV_0081/c/31:35,
1/c/473:479,
1/c/509:518,
1/c/533:546,
1/c/592:595		No text annotation
J5_8CIV_0091/c/54:57,
1/c/90:97,
1/c/386:388,
1/c/409:411,
1/c/422:426		No text annotation
homologous
J5_8C3A_020
NA
J6_8CIV_0011/AA/22:27,
1/AA/58:68,
1/AA/75:79,
1/AA/106:110,
1/AA/321:331,
1/CC/32:35		No text annotation
J6_8CIV_0021/AA/2416:2419,
1/AA/2611:2614,
1/AA/2627:2628,
1/AA/2650:2653,
1/AA/2754:2765,
1/AA/2793:2804		No text annotation
J7_8CIV_0011/AA/949:954,
1/AA/967:968,
1/AA/1114:1117,
1/AA/1141:1146,
1/AA/1157:1161,
1/AA/1338:1339,
1/AA/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_8CIV_003No text annotation
J3_8CIV_009No text annotation
J3_8CIV_043No text annotation

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