HL_8CIV_051

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8CIV|1|AA|A|2372, 8CIV|1|AA|A|2373, 8CIV|1|AA|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CIV_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0476

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8CIV|1|AA|G|2369
8CIV|1|AA|G|2370
8CIV|1|AA|G|2371
8CIV|1|AA|A|2372
8CIV|1|AA|A|2373
8CIV|1|AA|C|2374
8CIV|1|AA|G|2375
8CIV|1|AA|G|2376
8CIV|1|AA|G|2377
8CIV|1|AA|C|2378

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain FF

60S ribosomal protein L3

Chain Q

60S ribosomal protein L32