HL_8CIV_053

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGAAUUCAUUUUCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|AA|G|2533
8CIV|1|AA|G|2534
8CIV|1|AA|A|2535
8CIV|1|AA|A|2536
8CIV|1|AA|U|2537
8CIV|1|AA|U|2538
8CIV|1|AA|C|2539
8CIV|1|AA|A|2540
8CIV|1|AA|U|2541
8CIV|1|AA|U|2542
8CIV|1|AA|U|2543
8CIV|1|AA|U|2544
8CIV|1|AA|C|2545
8CIV|1|AA|C|2546

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain KK

60S ribosomal protein L8-A

Chain S

60S ribosomal protein L34-A