HL_8CIV_098

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8CIV|1|c|A|780, 8CIV|1|c|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CIV_098 not in the Motif Atlas

Homologous match to HL_4V88_204

Geometric discrepancy: 0.4657

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8CIV|1|c|C|777
8CIV|1|c|G|778
8CIV|1|c|U|779
8CIV|1|c|A|780
8CIV|1|c|U|781
8CIV|1|c|U|782
8CIV|1|c|G|783

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A