HL_8CIV_115

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

8CIV|1|AA|U|545, 8CIV|1|AA|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CIV_115 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.3607

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|AA|G|542
8CIV|1|AA|C|543
8CIV|1|AA|C|544
8CIV|1|AA|U|545
8CIV|1|AA|C|546
8CIV|1|AA|G|547
8CIV|1|AA|G|548
8CIV|1|AA|U|549

Current chains

Chain AA

25S ribosomal RNA

Nearby chains