HL_8CIV_120

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAACAGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CIV_120 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3476

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CIV|1|AA|G|2672
8CIV|1|AA|A|2673
8CIV|1|AA|A|2674
8CIV|1|AA|C|2675
8CIV|1|AA|A|2676
8CIV|1|AA|G|2677
8CIV|1|AA|A|2678
8CIV|1|AA|A|2679
8CIV|1|AA|A|2680
8CIV|1|AA|U|2681
8CIV|1|AA|C|2682

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain Bb

Transfer RNA; tRNA

Chain NN

60S ribosomal protein L11-A