HL_8CKU_005
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 8CKU|1|AA|C|200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CKU_005 not in the Motif Atlas
- Homologous match to HL_5TBW_005
- Geometric discrepancy: 0.1184
- The information below is about HL_5TBW_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8CKU|1|AA|U|194
8CKU|1|AA|U|195
8CKU|1|AA|G|196
8CKU|1|AA|G|197
8CKU|1|AA|A|198
8CKU|1|AA|A|199
8CKU|1|AA|C|200
8CKU|1|AA|A|201
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain GG
- 60S ribosomal protein L4-A
- Chain K
- 60S ribosomal protein L26-A
- Chain Q
- 60S ribosomal protein L32
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