Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8CKU_0011/AA/38:45No text annotation
geometric
HL_5TBW_001
NA
HL_8CKU_0021/AA/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_8CKU_0031/AA/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_8CKU_0041/AA/132:136No text annotation
homologous
HL_8C3A_004
NA
HL_8CKU_0051/AA/194:201T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_8CKU_0061/AA/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_8CKU_0071/AA/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8CKU_0081/AA/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_8CKU_0091/AA/303:312Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_8CKU_0101/AA/357:362GNRA
homologous
HL_8C3A_010
NA
HL_8CKU_0111/AA/382:387GNRA
homologous
HL_8C3A_011
NA
HL_8CKU_0121/AA/543:548No text annotation
HL_8CKU_0131/AA/599:604GNRA
homologous
HL_5TBW_013
NA
HL_8CKU_1171/AA/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8CKU_0151/AA/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_8CKU_0161/AA/707:712GNRA
homologous
HL_8C3A_016
NA
HL_8CKU_0171/AA/732:737GNRA
homologous
HL_5TBW_017
NA
HL_8CKU_0181/AA/763:768No text annotation
homologous
HL_5TBW_018
NA
HL_8CKU_0191/AA/844:849GNRA
homologous
HL_5TBW_019
NA
HL_8CKU_1181/AA/876:885No text annotation
homologous
HL_8C3A_020
NA
HL_8CKU_0211/AA/910:918No text annotation
homologous
HL_8C3A_021
NA
HL_8CKU_0221/AA/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_8CKU_1281/AA/1023:1029No text annotation
HL_8CKU_0241/AA/1076:1083No text annotation
geometric
HL_5TBW_024
NA
HL_8CKU_0251/AA/1126:1132GNRA
geometric
HL_5TBW_025
NA
HL_8CKU_0261/AA/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_8CKU_0271/AA/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_8CKU_0281/AA/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8CKU_0291/AA/1347:1357Mini UNCG
geometric
HL_4OOG_001
HL_56334.1
HL_8CKU_0301/AA/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_8CKU_0311/AA/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8CKU_0321/AA/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_8CKU_0331/AA/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_8CKU_0341/AA/1563:1577No text annotation
HL_8CKU_0351/AA/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_8CKU_0361/AA/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_8CKU_0371/AA/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_8CKU_0381/AA/1719:1725No text annotation
homologous
HL_8C3A_038
NA
HL_8CKU_0391/AA/1760:1765GNRA related
homologous
HL_5TBW_039
NA
HL_8CKU_0401/AA/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_8CKU_0411/AA/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_8CKU_0421/AA/1862:1868GNRA
homologous
HL_8C3A_042
NA
HL_8CKU_0431/AA/1923:1928No text annotation
geometric
HL_7RQB_042
NA
HL_8CKU_0451/AA/2110:2114No text annotation
homologous
HL_8C3A_045
NA
HL_8CKU_0461/AA/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_8CKU_0471/AA/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_8CKU_1191/AA/2220:2225GNRA
homologous
HL_8P9A_159
HL_37824.8
HL_8CKU_0491/AA/2253:2263No text annotation
homologous
HL_8C3A_049
NA
HL_8CKU_0501/AA/2292:2300No text annotation
homologous
HL_8C3A_050
NA
HL_8CKU_0511/AA/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_8CKU_0521/AA/2452:2495No text annotation
HL_8CKU_0541/AA/2568:2573No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_8CKU_0551/AA/2616:2624No text annotation
homologous
HL_8C3A_055
NA
HL_8CKU_0561/AA/2633:2645No text annotation
homologous
HL_8C3A_056
NA
HL_8CKU_0571/AA/2673:2681No text annotation
homologous
HL_5TBW_056
NA
HL_8CKU_0581/AA/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_8CKU_1201/AA/2724:2732No text annotation
homologous
HL_8P9A_169
HL_80599.2
HL_8CKU_0601/AA/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_8CKU_0611/AA/2776:2784Pseudoknot geometry
homologous
HL_5TBW_060
NA
HL_8CKU_0621/AA/2840:2848No text annotation
homologous
HL_8C3A_062
NA
HL_8CKU_0631/AA/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_8CKU_0641/AA/2920:2926No text annotation
homologous
HL_5TBW_063
NA
HL_8CKU_0651/AA/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_8CKU_0661/AA/3025:3030GNRA
homologous
HL_8C3A_066
NA
HL_8CKU_0671/AA/3068:3073Ribsomal LSU H95
homologous
HL_5TBW_066
NA
HL_8CKU_0681/AA/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_8CKU_0691/AA/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_8CKU_0701/AA/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_8CKU_0711/AA/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_8CKU_0721/AA/3350:3353No text annotation
geometric
HL_8C3A_004
NA
HL_8CKU_1211/BB/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8CKU_0731/BB/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_8CKU_0741/BB/88:93GNRA
homologous
HL_5TBW_186
NA
HL_8CKU_0751/Bb/13:22No text annotation
homologous
HL_7K98_001
NA
HL_8CKU_0761/Bb/30:40No text annotation
homologous
HL_4WSM_225
HL_36684.4
HL_8CKU_0771/Bb/53:61T-loop with 2 stacked bulged bases
homologous
HL_4YYE_003
HL_28252.9
HL_8CKU_1221/CC/47:56No text annotation
homologous
HL_8P9A_186
HL_93438.2
HL_8CKU_0781/CC/69:89No text annotation
homologous
HL_8P4V_073
NA
HL_8CKU_0791/CC/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_8CKU_0801/CC/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_8CKU_0811/Cc/13:23No text annotation
homologous
HL_3WFS_001
NA
HL_8CKU_0821/Cc/32:40tRNA anticodon loop
homologous
HL_6CFJ_107
HL_06059.7
HL_8CKU_0831/Cc/54:62T-loop with 2 stacked bulged bases
homologous
HL_3TUP_003
HL_28252.9
HL_8CKU_0841/c/7:17No text annotation
homologous
HL_4V88_186
NA
HL_8CKU_0861/c/153:161No text annotation
HL_8CKU_0881/c/243:250T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_8CKU_1231/c/275:281No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_8CKU_0891/c/276:279Mini UNCG
geometric
HL_5TBW_071
NA
HL_8CKU_0901/c/330:338GNRA related
homologous
HL_4V88_193
NA
HL_8CKU_0911/c/368:373No text annotation
geometric
HL_4V88_198
NA
HL_8CKU_0921/c/393:404No text annotation
homologous
HL_4V88_195
NA
HL_8CKU_1241/c/413:420No text annotation
HL_8CKU_0941/c/450:456No text annotation
homologous
HL_4V88_197
NA
HL_8CKU_1251/c/518:533No text annotation
HL_8CKU_0961/c/520:532No text annotation
geometric
HL_4V88_199
NA
HL_8CKU_0971/c/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_8CKU_0981/c/764:772No text annotation
homologous
HL_4V88_203
NA
HL_8CKU_0991/c/777:783No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_8CKU_1011/c/900:909No text annotation
homologous
HL_4V88_206
NA
HL_8CKU_1021/c/937:942GNRA
homologous
HL_4V88_207
NA
HL_8CKU_1261/c/997:1007No text annotation
homologous
HL_8C3A_213
NA
HL_8CKU_1041/c/1055:1064No text annotation
geometric
HL_8G9Z_001
HL_75660.5
HL_8CKU_1051/c/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_8CKU_1271/c/1121:1126GNRA
homologous
HL_8P9A_214
HL_37824.8
HL_8CKU_1071/c/1188:1197No text annotation
homologous
HL_8C3A_217
NA
HL_8CKU_1081/c/1238:1247Anticodon loop related
homologous
HL_4V88_213
NA
HL_8CKU_1091/c/1296:1301GNRA
homologous
HL_4V88_214
NA
HL_8CKU_1101/c/1309:1316No text annotation
homologous
HL_4V88_215
NA
HL_8CKU_1291/c/1360:1363No text annotation
HL_8CKU_1121/c/1396:1402GNRA related
geometric
HL_3OXE_002
HL_04783.2
HL_8CKU_1131/c/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_8CKU_1141/c/1550:1561No text annotation
homologous
HL_4V88_219
NA
HL_8CKU_1151/c/1594:1602No text annotation
homologous
HL_4V88_220
NA
HL_8CKU_1161/c/1778:1783GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_8CKU_014No text annotation
HL_8CKU_020No text annotation
HL_8CKU_023No text annotation
HL_8CKU_044No text annotation
HL_8CKU_048No text annotation
HL_8CKU_053No text annotation
HL_8CKU_059No text annotation
HL_8CKU_085No text annotation
HL_8CKU_087No text annotation
HL_8CKU_093No text annotation
HL_8CKU_095No text annotation
HL_8CKU_100No text annotation
HL_8CKU_103No text annotation
HL_8CKU_106GNRA with extra cWW
HL_8CKU_111Externally structured

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8CKU_0021/AA/7:8,
1/CC/150:152
Single bulged C
geometric
IL_5TBW_002
NA
IL_8CKU_0031/AA/13:15,
1/CC/144:145
Single bulged U
homologous
IL_8C3A_003
NA
IL_8CKU_0041/AA/27:28,
1/AA/56:58
No text annotation
homologous
IL_8C3A_004
NA
IL_8CKU_0051/AA/31:38,
1/AA/45:53
tSH-tHW-tHH-tHS
homologous
IL_5TBW_005
NA
IL_8CKU_0061/AA/82:89,
1/AA/97:103
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_8CKU_0071/AA/123:124,
1/AA/144:149
No text annotation
homologous
IL_8C3A_007
NA
IL_8CKU_0081/AA/125:127,
1/AA/141:143
Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_8CKU_0091/AA/163:165,
1/AA/257:258
Single stack bend
homologous
IL_5TBW_009
NA
IL_8CKU_0101/AA/169:172,
1/AA/247:253
No text annotation
IL_8CKU_0111/AA/172:174,
1/AA/244:247
Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_8CKU_0121/AA/177:178,
1/AA/238:241
Single stack bend
homologous
IL_8C3A_012
NA
IL_8CKU_0131/AA/189:191,
1/AA/204:205
Single bulged U
homologous
IL_8C3A_013
NA
IL_8CKU_0141/AA/337:339,
1/CC/25:26
Single bulged A
homologous
IL_5TBW_013
NA
IL_8CKU_0151/AA/376:379,
1/AA/390:403
No text annotation
homologous
IL_8C3A_015
NA
IL_8CKU_0161/AA/404:410,
1/CC/13:19
Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_8CKU_0171/AA/429:431,
1/AA/628:630
Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_8CKU_0191/AA/512:513,
1/AA/577:579
Single bulged A
homologous
IL_5TBW_018
NA
IL_8CKU_0201/AA/517:525,
1/AA/567:573
No text annotation
homologous
IL_5TBW_019
NA
IL_8CKU_0211/AA/531:538,
1/AA/553:561
No text annotation
homologous
IL_5TBW_020
NA
IL_8CKU_0221/AA/668:670,
1/AA/792:794
Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_8CKU_0231/AA/680:684,
1/AA/696:700
No text annotation
homologous
IL_5TBW_022
NA
IL_8CKU_0241/AA/725:728,
1/AA/741:745
No text annotation
homologous
IL_8C3A_025
NA
IL_8CKU_0251/AA/752:753,
1/AA/779:781
Single bulged A
homologous
IL_8C3A_026
NA
IL_8CKU_0261/AA/755:756,
1/AA/775:777
Single bulged U
homologous
IL_5TBW_025
NA
IL_8CKU_0271/AA/758:763,
1/AA/768:773
No text annotation
geometric
IL_5TBW_026
NA
IL_8CKU_2451/AA/803:805,
1/AA/938:940
Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8CKU_2461/AA/805:809,
1/AA/931:938
No text annotation
homologous
IL_8C3A_030
NA
IL_8CKU_0301/AA/828:829,
1/AA/895:897
Single bulged A
homologous
IL_8C3A_031
NA
IL_8CKU_0311/AA/833:834,
1/AA/859:861
Single bulged G
homologous
IL_8C3A_032
NA
IL_8CKU_0321/AA/834:838,
1/AA/855:859
Triple sheared
geometric
IL_5J7L_263
IL_50730.2
IL_8CKU_0331/AA/869:872,
1/AA/888:890
Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8CKU_0341/AA/873:875,
1/AA/886:887
Single bulged U
homologous
IL_8C3A_035
NA
IL_8CKU_0351/AA/907:909,
1/AA/919:923
No text annotation
homologous
IL_8C3A_036
NA
IL_8CKU_0361/AA/954:956,
1/AA/965:967
Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_8CKU_0371/AA/969:970,
1/AA/1111:1113
No text annotation
homologous
IL_8C3A_038
NA
IL_8CKU_0381/AA/977:982,
1/AA/1101:1104
No text annotation
IL_8CKU_0391/AA/983:985,
1/AA/1099:1100
Single bulged G
homologous
IL_8C3A_040
NA
IL_8CKU_0401/AA/991:997,
1/AA/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5TBW_038
NA
IL_8CKU_0411/AA/997:998,
1/AA/1050:1052
Minor groove platform
geometric
IL_5TBW_039
NA
IL_8CKU_0421/AA/999:1004,
1/AA/1046:1049
C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_8CKU_0431/AA/1006:1011,
1/AA/1039:1044
Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.1
IL_8CKU_0441/AA/1014:1020,
1/AA/1032:1036
No text annotation
IL_8CKU_0451/AA/1069:1071,
1/AA/1087:1089
Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_8CKU_0461/AA/1074:1076,
1/AA/1083:1084
Single bulged G
homologous
IL_8C3A_048
NA
IL_8CKU_0471/AA/1120:1122,
1/AA/1136:1138
Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8CKU_0491/AA/1167:1171,
1/AA/1328:1332
UAA/GAN
homologous
IL_8C3A_051
NA
IL_8CKU_0501/AA/1173:1180,
1/AA/1325:1326
SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_8CKU_0511/AA/1180:1182,
1/AA/1324:1325
Single bulged U
homologous
IL_8C3A_053
NA
IL_8CKU_0521/AA/1187:1194,
1/AA/1314:1319
No text annotation
geometric
IL_5TBW_051
NA
IL_8CKU_0531/AA/1194:1205,
1/AA/1299:1314
No text annotation
geometric
IL_5TBW_052
NA
IL_8CKU_0541/AA/1207:1209,
1/AA/1296:1297
Single bulged U
homologous
IL_8C3A_056
NA
IL_8CKU_0551/AA/1218:1226,
1/AA/1283:1287
Kink-turn
homologous
IL_8C3A_057
NA
IL_8CKU_0561/AA/1234:1238,
1/AA/1250:1254
No text annotation
homologous
IL_8C3A_058
NA
IL_8CKU_0571/AA/1262:1266,
1/AA/1275:1277
Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_8CKU_0581/AA/1376:1378,
1/AA/1428:1431
No text annotation
homologous
IL_8C3A_061
NA
IL_8CKU_0591/AA/1385:1387,
1/AA/1420:1421
Single bulged A
homologous
IL_5TBW_058
NA
IL_8CKU_0601/AA/1388:1395,
1/AA/1415:1419
Kink-turn
homologous
IL_5TBW_059
NA
IL_8CKU_0611/AA/1398:1400,
1/AA/1411:1412
Single bulged A
homologous
IL_5TBW_060
NA
IL_8CKU_2501/AA/1444:1450,
1/AA/2354:2359
7x6 Sarcin-Ricin; G-bulge
homologous
IL_8P9A_289
IL_26307.2
IL_8CKU_2511/AA/1501:1505,
1/AA/1513:1515
C-loop
homologous
IL_8P9A_290
IL_63596.11
IL_8CKU_0641/AA/1532:1536,
1/AA/1585:1590
UAA/GAN
homologous
IL_8C3A_067
NA
IL_8CKU_0651/AA/1561:1563,
1/AA/1577:1579
Isolated non-canonical cWW pair
geometric
IL_1T0E_002
IL_28037.2
IL_8CKU_0661/AA/1618:1621,
1/AA/1824:1826
No text annotation
homologous
IL_8C3A_070
NA
IL_8CKU_2521/AA/1623:1624,
1/AA/1819:1822
No text annotation
homologous
IL_8C3A_483
NA
IL_8CKU_0681/AA/1627:1631,
1/AA/1811:1816
No text annotation
homologous
IL_8C3A_072
NA
IL_8CKU_0691/AA/1645:1649,
1/AA/1806:1810
Triple sheared
homologous
IL_5TBW_067
NA
IL_8CKU_0701/AA/1661:1663,
1/AA/1786:1788
Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_8CKU_0711/AA/1669:1670,
1/AA/1778:1780
Single bulged C
homologous
IL_5TBW_069
NA
IL_8CKU_0721/AA/1670:1671,
1/AA/1776:1778
Single stack bend
geometric
IL_5TBW_070
NA
IL_8CKU_0731/AA/1694:1698,
1/AA/1747:1752
No text annotation
homologous
IL_8C3A_077
NA
IL_8CKU_0741/AA/1702:1707,
1/AA/1737:1743
No text annotation
homologous
IL_5TBW_072
NA
IL_8CKU_0751/AA/1711:1717,
1/AA/1727:1733
Kink-turn
homologous
IL_5TBW_073
NA
IL_8CKU_0761/AA/1883:1889,
1/AA/2346:2349
No text annotation
homologous
IL_8C3A_080
NA
IL_8CKU_0771/AA/1895:1897,
1/AA/2338:2340
Isolated tWW turn
geometric
IL_4WF9_063
IL_67095.2
IL_8CKU_2531/AA/1898:1901,
1/AA/2336:2337
Major groove platform; stack outside cWW
geometric
IL_8C3A_082
NA
IL_8CKU_2541/AA/1898:1906,
1/AA/2333:2337
No text annotation
homologous
IL_8C3A_484
NA
IL_8CKU_0791/AA/1901:1906,
1/AA/2333:2336
No text annotation
homologous
IL_8C3A_083
NA
IL_8CKU_0801/AA/1918:1923,
1/AA/1928:1934
No text annotation
homologous
IL_8C3A_084
NA
IL_8CKU_0811/AA/1940:1942,
1/AA/2106:2108
Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8CKU_0821/AA/1947:1948,
1/AA/2098:2101
No text annotation
homologous
IL_5TBW_080
NA
IL_8CKU_0841/AA/2128:2129,
1/AA/2323:2325
Single bulged A
homologous
IL_8C3A_087
NA
IL_8CKU_0851/AA/2156:2161,
1/AA/2173:2180
No text annotation
homologous
IL_8C3A_088
NA
IL_8CKU_0861/AA/2196:2199,
1/AA/2245:2246
No text annotation
homologous
IL_8C3A_089
NA
IL_8CKU_0871/AA/2200:2201,
1/AA/2241:2244
Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_8CKU_0881/AA/2204:2210,
1/AA/2235:2238
No text annotation
IL_8CKU_0891/AA/2211:2217,
1/AA/2228:2234
No text annotation
homologous
IL_8C3A_093
NA
IL_8CKU_0901/AA/2276:2277,
1/AA/2307:2310
Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_8CKU_2551/AA/2277:2288,
1/AA/2304:2307
No text annotation
homologous
IL_8C3A_095
NA
IL_8CKU_0921/AA/2391:2394,
1/AA/2986:2988
No text annotation
homologous
IL_8C3A_096
NA
IL_8CKU_0931/AA/2396:2398,
1/AA/2981:2984
No text annotation
homologous
IL_8C3A_097
NA
IL_8CKU_0941/AA/2409:2411,
1/AA/2811:2812
Single bulged U
homologous
IL_5TBW_093
NA
IL_8CKU_0951/AA/2412:2413,
1/AA/2807:2810
Minor groove platform
homologous
IL_5TBW_094
NA
IL_8CKU_0971/AA/2423:2425,
1/AA/2604:2607
No text annotation
homologous
IL_8C3A_100
NA
IL_8CKU_0991/AA/2444:2451,
1/AA/2496:2503
No text annotation
IL_8CKU_1001/AA/2520:2526,
1/AA/2584:2587
No text annotation
homologous
IL_5TBW_096
NA
IL_8CKU_1011/AA/2614:2615,
1/AA/2625:2627
Single bulged A
homologous
IL_5TBW_098
NA
IL_8CKU_1021/AA/2666:2668,
1/AA/2686:2690
No text annotation
homologous
IL_8C3A_108
NA
IL_8CKU_1031/AA/2714:2716,
1/AA/2740:2741
Single bulged A
geometric
IL_4V88_399
NA
IL_8CKU_1041/AA/2718:2721,
1/AA/2735:2738
Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_8CKU_1061/AA/2770:2773,
1/AA/2787:2788
Single stack bend
homologous
IL_8C3A_110
NA
IL_8CKU_1071/AA/2823:2826,
1/AA/2863:2867
No text annotation
homologous
IL_8C3A_111
NA
IL_8CKU_1081/AA/2826:2828,
1/AA/2862:2863
Major groove platform
geometric
IL_5TBW_104
NA
IL_8CKU_1091/AA/2828:2830,
1/AA/2858:2862
Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_8CKU_1101/AA/2835:2839,
1/AA/2849:2853
No text annotation
homologous
IL_8C3A_114
NA
IL_8CKU_1111/AA/2876:2877,
1/AA/2949:2951
Major groove platform
geometric
IL_5TBW_107
NA
IL_8CKU_1131/AA/2879:2881,
1/AA/2943:2947
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_8CKU_1141/AA/2881:2882,
1/AA/2940:2943
Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_8CKU_1151/AA/2889:2891,
1/AA/2912:2914
Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8CKU_2561/AA/2889:2892,
1/AA/2909:2914
No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_8CKU_1161/AA/2891:2892,
1/AA/2909:2912
Major groove platform with intercalation
homologous
IL_8C3A_119
NA
IL_8CKU_1171/AA/2918:2920,
1/AA/2926:2928
Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_8CKU_1191/AA/2960:2961,
1/AA/2970:2972
Single bulged A
geometric
IL_5J7L_344
IL_31462.7
IL_8CKU_1201/AA/3004:3007,
1/AA/3139:3144
Double sheared
homologous
IL_5TBW_114
NA
IL_8CKU_1211/AA/3012:3014,
1/AA/3040:3042
Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_8CKU_1221/AA/3018:3025,
1/AA/3030:3036
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8CKU_1231/AA/3047:3051,
1/AA/3091:3094
Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_8CKU_1241/AA/3054:3059,
1/AA/3084:3088
UAA/GAN related
homologous
IL_5TBW_118
NA
IL_8CKU_1251/AA/3063:3064,
1/AA/3077:3080
No text annotation
homologous
IL_8C3A_128
NA
IL_8CKU_1261/AA/3103:3107,
1/AA/3127:3131
UAA/GAN
homologous
IL_8C3A_129
NA
IL_8CKU_1271/AA/3164:3166,
1/AA/3284:3286
Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_8CKU_1281/AA/3168:3170,
1/AA/3280:3282
Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_8CKU_1291/AA/3177:3179,
1/AA/3210:3211
Single bulged A
geometric
IL_5TBW_123
NA
IL_8CKU_1301/AA/3179:3188,
1/AA/3204:3210
No text annotation
homologous
IL_5TBW_124
NA
IL_8CKU_1311/AA/3193:3194,
1/AA/3197:3199
Single bulged U
geometric
IL_5TBW_125
NA
IL_8CKU_1321/AA/3225:3229,
1/AA/3258:3260
No text annotation
homologous
IL_5TBW_126
NA
IL_8CKU_1331/AA/3233:3235,
1/AA/3252:3254
Isolated non-canonical cWW pair
geometric
IL_2R8S_001
IL_87907.2
IL_8CKU_1341/AA/3235:3238,
1/AA/3249:3252
Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_8CKU_1351/AA/3300:3303,
1/AA/3311:3314
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_8CKU_1361/AA/3318:3320,
1/AA/3387:3388
Single bulged U
homologous
IL_8C3A_136
NA
IL_8CKU_1371/AA/3324:3325,
1/AA/3381:3383
Single bulged U
homologous
IL_5TBW_131
NA
IL_8CKU_1381/AA/3328:3330,
1/AA/3373:3378
No text annotation
homologous
IL_8C3A_138
NA
IL_8CKU_1391/AA/3332:3337,
1/AA/3367:3371
No text annotation
homologous
IL_8C3A_139
NA
IL_8CKU_1401/AA/3340:3342,
1/AA/3363:3364
Single bulged U
geometric
IL_4WF9_088
IL_89505.4
IL_8CKU_1411/AA/3342:3345,
1/AA/3360:3363
Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_8CKU_1421/BB/15:16,
1/BB/63:65
Single bulged A
homologous
IL_5TBW_372
NA
IL_8CKU_1431/BB/21:27,
1/BB/53:58
Minor groove platform related
homologous
IL_5TBW_373
NA
IL_8CKU_1441/BB/28:29,
1/BB/49:52
Minor groove platform
geometric
IL_5TBW_374
NA
IL_8CKU_1451/BB/29:30,
1/BB/47:49
Single stack bend
homologous
IL_5TBW_375
NA
IL_8CKU_1461/BB/32:36,
1/BB/41:45
Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_8CKU_1471/BB/72:80,
1/BB/100:106
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_8CKU_1481/BB/84:87,
1/BB/94:96
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_8CKU_1511/CC/44:64,
1/CC/96:100
No text annotation
geometric
IL_5TBW_144
NA
IL_8CKU_1521/CC/64:66,
1/CC/93:96
Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8CKU_1531/CC/68:69,
1/CC/89:91
Single bulged U
geometric
IL_5TBW_146
NA
IL_8CKU_1551/c/24:26,
1/c/600:601
Single bulged C
homologous
IL_4V88_384
NA
IL_8CKU_1571/c/35:37,
1/c/471:473
Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_87907.2
IL_8CKU_1581/c/37:41,
1/c/466:471
Double sheared with non-canonical cWW
geometric
IL_4WFL_001
IL_17948.2
IL_8CKU_1591/c/42:48,
1/c/431:433
No text annotation
homologous
IL_4V88_387
NA
IL_8CKU_1601/c/50:52,
1/c/428:429
Minor groove platform
homologous
IL_4V88_388
NA
IL_8CKU_1611/c/58:63,
1/c/87:89
No text annotation
homologous
IL_4V88_389
NA
IL_8CKU_1621/c/64:69,
1/c/82:86
No text annotation
homologous
IL_4V88_390
NA
IL_8CKU_1631/c/109:112,
1/c/302:305
Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_8CKU_1641/c/113:116,
1/c/300:301
Multiple bulged bases
homologous
IL_4V88_392
NA
IL_8CKU_1651/c/117:122,
1/c/295:299
No text annotation
homologous
IL_4V88_393
NA
IL_8CKU_1661/c/142:149,
1/c/165:172
tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_8CKU_1671/c/150:152,
1/c/162:164
Isolated non-canonical cWW contact
homologous
IL_4V88_395
NA
IL_8CKU_2571/c/150:153,
1/c/161:164
No text annotation
homologous
IL_8C3A_403
NA
IL_8CKU_1681/c/204:206,
1/c/259:263
Major groove platform with extra cWW
geometric
IL_7A0S_019
IL_51387.3
IL_8CKU_1691/c/206:208,
1/c/257:259
Isolated non-canonical cWW pair
homologous
IL_4V88_398
NA
IL_8CKU_2581/c/270:273,
1/c/283:285
No text annotation
homologous
IL_8P9A_389
IL_15698.3
IL_8CKU_1721/c/275:276,
1/c/279:281
Single bulged U
geometric
IL_4V9F_039
IL_89505.4
IL_8CKU_1731/c/311:316,
1/c/348:355
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_8CKU_1741/c/318:323,
1/c/345:346
No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_8CKU_1751/c/363:365,
1/c/376:381
No text annotation
homologous
IL_4V88_404
NA
IL_8CKU_1761/c/389:391,
1/c/406:408
Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_8CKU_2591/c/411:413,
1/c/420:422
Isolated non-canonical cWW pair
homologous
IL_8C3A_414
NA
IL_8CKU_1771/c/439:441,
1/c/463:464
Single bulged U
homologous
IL_4V88_407
NA
IL_8CKU_1781/c/443:447,
1/c/460:461
C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_8CKU_1791/c/447:448,
1/c/458:460
Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_8CKU_1801/c/479:484,
1/c/503:509
No text annotation
IL_8CKU_1811/c/514:516,
1/c/536:543
No text annotation
homologous
IL_8C3A_420
NA
IL_8CKU_1821/c/516:518,
1/c/533:536
Minor groove platform with extra cWW
geometric
IL_4V88_411
NA
IL_8CKU_1831/c/518:520,
1/c/532:533
Minor groove platform
homologous
IL_4V88_412
NA
IL_8CKU_1841/c/550:557,
1/c/587:588
SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_8CKU_1851/c/557:559,
1/c/586:587
Single bulged U
homologous
IL_4V88_414
NA
IL_8CKU_2601/c/562:568,
1/c/575:583
No text annotation
homologous
IL_8P9A_404
IL_54177.4
IL_8CKU_1871/c/616:622,
1/c/1104:1105
No text annotation
homologous
IL_4V88_416
NA
IL_8CKU_1881/c/624:626,
1/c/973:975
Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_8CKU_1891/c/627:631,
1/c/968:972
tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_8CKU_1911/c/646:648,
1/c/686:688
No text annotation
IL_8CKU_1931/c/746:747,
1/c/802:805
Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_8CKU_1941/c/748:750,
1/c/799:801
Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_8CKU_1951/c/751:759,
1/c/793:798
No text annotation
IL_8CKU_1961/c/865:866,
1/c/962:965
Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_8CKU_2611/c/868:869,
1/c/958:960
Single bulged U
geometric
IL_7KVT_002
IL_89505.4
IL_8CKU_2621/c/871:873,
1/c/954:956
Isolated non-canonical cWW pair
geometric
IL_2R8S_001
IL_87907.2
IL_8CKU_1991/c/874:878,
1/c/950:953
Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_8CKU_2001/c/885:888,
1/c/924:927
Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_8CKU_2011/c/893:899,
1/c/910:919
Kink-turn related
homologous
IL_8C3A_440
NA
IL_8CKU_2021/c/985:990,
1/c/1014:1016
Other IL
homologous
IL_4V88_435
NA
IL_8CKU_2031/c/990:994,
1/c/1010:1014
tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_8CKU_2041/c/1034:1036,
1/c/1095:1101
No text annotation
homologous
IL_4V88_437
NA
IL_8CKU_2051/c/1041:1044,
1/c/1074:1077
Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_8CKU_2061/c/1051:1053,
1/c/1066:1067
Single bulged U
geometric
IL_5TBW_086
NA
IL_8CKU_2071/c/1111:1118,
1/c/1129:1134
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_8CKU_2081/c/1146:1147,
1/c/1630:1632
Single bulged A
homologous
IL_4V88_441
NA
IL_8CKU_2091/c/1149:1151,
1/c/1627:1628
Single bulged G
homologous
IL_4V88_442
NA
IL_8CKU_2101/c/1157:1160,
1/c/1617:1621
C-loop
homologous
IL_4V88_443
NA
IL_8CKU_2111/c/1173:1175,
1/c/1464:1466
Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_8CKU_2121/c/1178:1179,
1/c/1459:1461
Minor groove platform
homologous
IL_4V88_445
NA
IL_8CKU_2131/c/1213:1215,
1/c/1448:1450
Isolated non-canonical cWW pair
homologous
IL_4V88_446
NA
IL_8CKU_2641/c/1222:1233,
1/c/1252:1261
No text annotation
homologous
IL_8P9A_435
NA
IL_8CKU_2151/c/1234:1236,
1/c/1249:1251
No text annotation
homologous
IL_4V88_448
NA
IL_8CKU_2651/c/1268:1270,
1/c/1440:1441
Single bulged U
homologous
IL_8C3A_455
NA
IL_8CKU_2171/c/1272:1276,
1/c/1436:1438
Isolated cWS basepair
geometric
IL_4V88_450
NA
IL_8CKU_2661/c/1272:1278,
1/c/1430:1438
No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_8CKU_2181/c/1276:1278,
1/c/1430:1436
Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_8CKU_2671/c/1280:1281,
1/c/1426:1428
Single bulged A
homologous
IL_8C3A_458
NA
IL_8CKU_2201/c/1290:1292,
1/c/1323:1325
Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_8CKU_2211/c/1306:1308,
1/c/1317:1318
Minor groove platform
homologous
IL_4V88_454
NA
IL_8CKU_2221/c/1339:1342,
1/c/1383:1385
Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_8CKU_2231/c/1345:1348,
1/c/1377:1380
Minor groove platform
homologous
IL_4V88_456
NA
IL_8CKU_2241/c/1352:1358,
1/c/1365:1373
No text annotation
IL_8CKU_2251/c/1389:1391,
1/c/1407:1412
No text annotation
homologous
IL_8C3A_465
NA
IL_8CKU_2261/c/1480:1487,
1/c/1519:1527
No text annotation
homologous
IL_4V88_459
NA
IL_8CKU_2271/c/1488:1494,
1/c/1513:1518
No text annotation
homologous
IL_8P9A_449
IL_22564.1
IL_8CKU_2281/c/1495:1498,
1/c/1509:1512
Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_8CKU_2291/c/1540:1546,
1/c/1565:1571
No text annotation
homologous
IL_8C3A_469
NA
IL_8CKU_2301/c/1636:1638,
1/c/1764:1767
No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_8CKU_2311/c/1638:1641,
1/c/1760:1764
No text annotation
homologous
IL_4V88_464
NA
IL_8CKU_2321/c/1642:1644,
1/c/1757:1759
Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_8CKU_2331/c/1644:1647,
1/c/1753:1757
No text annotation
homologous
IL_8CRE_469
IL_11399.2
IL_8CKU_2341/c/1650:1652,
1/c/1748:1750
Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_8CKU_2351/c/1653:1656,
1/c/1744:1747
Double sheared
geometric
IL_4V88_468
NA
IL_8CKU_2361/c/1656:1658,
1/c/1743:1744
Single bulged U
homologous
IL_4V88_469
NA
IL_8CKU_2371/c/1665:1667,
1/c/1734:1736
Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_8CKU_2381/c/1669:1672,
1/c/1729:1732
Double sheared
geometric
IL_1SAQ_002
NA
IL_8CKU_2391/c/1672:1674,
1/c/1727:1729
Isolated non-canonical cWW pair
homologous
IL_4V88_472
NA
IL_8CKU_2401/c/1675:1678,
1/c/1723:1726
Tandem non-canonical cWW pairs
homologous
IL_4V88_473
NA
IL_8CKU_2411/c/1678:1682,
1/c/1719:1723
Triple sheared
homologous
IL_4V88_474
NA

Problematic loops

#loop idProblemSequence
IL_8CKU_001No text annotation
IL_8CKU_244No text annotation
IL_8CKU_018No text annotation
IL_8CKU_028No text annotation
IL_8CKU_029Isolated non-canonical cWW pair
IL_8CKU_247No text annotation
IL_8CKU_248No text annotation
IL_8CKU_249No text annotation
IL_8CKU_048Tandem non-canonical cWW pairs
IL_8CKU_0628x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
IL_8CKU_063No text annotation
IL_8CKU_067No text annotation
IL_8CKU_078Major groove platform with extra pair
IL_8CKU_083No text annotation
IL_8CKU_091No text annotation
IL_8CKU_096Isolated non-canonical cWW pair
IL_8CKU_098No text annotation
IL_8CKU_105Isolated non-canonical cWW pair
IL_8CKU_112Isolated non-canonical cWW pair
IL_8CKU_118No text annotation
IL_8CKU_149No text annotation
IL_8CKU_150No text annotation
IL_8CKU_154Isolated non-canonical cWW pair
IL_8CKU_156Isolated non-canonical cWW pair
IL_8CKU_170Isolated tHS basepair with bulges
IL_8CKU_171No text annotation
IL_8CKU_186No text annotation
IL_8CKU_190Isolated cWH basepair
IL_8CKU_192No text annotation
IL_8CKU_197Tandem non-canonical cWW pairs
IL_8CKU_198Tandem non-canonical cWW pairs
IL_8CKU_263No text annotation
IL_8CKU_214Isolated non-canonical cWW pair
IL_8CKU_216Isolated non-canonical cWW pair
IL_8CKU_219Isolated non-canonical cWW pair
IL_8CKU_268No text annotation
IL_8CKU_269No text annotation
IL_8CKU_242No text annotation
IL_8CKU_243Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8CKU_0011/AA/113:123,
1/AA/149:158,
1/AA/263:267
No text annotation
homologous
J3_8C3A_001
NA
J3_8CKU_0221/AA/113:124,
1/AA/144:158,
1/AA/263:267
No text annotation
J3_8CKU_0231/AA/340:356,
1/AA/363:368,
1/CC/21:24
No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_8CKU_0241/AA/369:376,
1/AA/403:404,
1/CC/19:20
No text annotation
geometric
J3_8C3A_048
NA
J3_8CKU_0251/AA/369:379,
1/AA/390:404,
1/CC/19:20
No text annotation
homologous
J3_8C3A_049
NA
J3_8CKU_0261/AA/502:503,
1/AA/588:597,
1/AA/606:611
No text annotation
homologous
J3_8P9A_048
J3_83726.1
J3_8CKU_0021/AA/814:820,
1/AA/905:907,
1/AA/923:926
No text annotation
homologous
J3_8C3A_003
NA
J3_8CKU_0271/AA/829:831,
1/AA/863:867,
1/AA/892:895
No text annotation
homologous
J3_8C3A_004
NA
J3_8CKU_0281/AA/986:987,
1/AA/1062:1066,
1/AA/1092:1098
No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_8CKU_0041/AA/1230:1232,
1/AA/1256:1262,
1/AA/1277:1279
No text annotation
homologous
J3_5TBW_007
NA
J3_8CKU_0051/AA/1479:1485,
1/AA/1857:1859,
1/AA/1871:1874
No text annotation
homologous
J3_8C3A_006
NA
J3_8CKU_0061/AA/1488:1491,
1/AA/1837:1843,
1/AA/1852:1854
No text annotation
homologous
J3_8C3A_007
NA
J3_8CKU_0291/AA/1526:1531,
1/AA/1591:1595,
1/AA/1612:1613
No text annotation
homologous
J3_8P9A_055
J3_31965.2
J3_8CKU_0301/AA/1537:1542,
1/AA/1551:1561,
1/AA/1579:1584
No text annotation
J3_8CKU_0311/AA/1631:1632,
1/AA/1641:1645,
1/AA/1810:1811
No text annotation
homologous
J3_8C3A_054
NA
J3_8CKU_0321/AA/1654:1658,
1/AA/1791:1792,
1/AA/1796:1801
No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_8CKU_0071/AA/2432:2435,
1/AA/2512:2517,
1/AA/2590:2597
No text annotation
homologous
J3_8C3A_008
NA
J3_8CKU_0081/AA/2529:2533,
1/AA/2546:2563,
1/AA/2578:2581
No text annotation
J3_8CKU_0331/AA/2651:2653,
1/AA/2754:2765,
1/AA/2793:2798
No text annotation
homologous
J3_8C3A_056
NA
J3_8CKU_0101/AA/2664:2666,
1/AA/2690:2692,
1/AA/2701:2706
No text annotation
homologous
J3_8C3A_010
NA
J3_8CKU_0111/AA/2886:2889,
1/AA/2914:2916,
1/AA/2930:2936
No text annotation
homologous
J3_8C3A_011
NA
J3_8CKU_0341/AA/3171:3176,
1/AA/3212:3220,
1/AA/3265:3279
No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_8CKU_0121/AA/3298:3300,
1/AA/3314:3318,
1/AA/3388:3390
No text annotation
homologous
J3_5TBW_015
NA
J3_8CKU_0351/BB/9:14,
1/BB/66:67,
1/BB/111:112
No text annotation
homologous
J3_8P9A_066
J3_12003.2
J3_8CKU_0361/CC/44:45,
1/CC/58:64,
1/CC/96:100
No text annotation
homologous
J3_8P9A_067
J3_35667.2
J3_8CKU_0371/c/41:42,
1/c/433:439,
1/c/464:466
No text annotation
homologous
J3_8C3A_082
NA
J3_8CKU_0381/c/633:635,
1/c/861:865,
1/c/965:966
No text annotation
geometric
J3_4V88_080
NA
J3_8CKU_0391/c/633:635,
1/c/861:866,
1/c/962:966
No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_8CKU_0401/c/751:763,
1/c/773:775,
1/c/785:798
No text annotation
J3_8CKU_0131/c/881:884,
1/c/928:936,
1/c/943:947
No text annotation
homologous
J3_4V88_033
NA
J3_8CKU_0141/c/1037:1039,
1/c/1079:1083,
1/c/1090:1094
No text annotation
homologous
J3_4V88_034
NA
J3_8CKU_0151/c/1161:1164,
1/c/1581:1587,
1/c/1609:1616
No text annotation
homologous
J3_4V88_035
NA
J3_8CKU_0161/c/1168:1171,
1/c/1468:1470,
1/c/1574:1577
No text annotation
homologous
J3_8C3A_039
NA
J3_8CKU_0171/c/1180:1187,
1/c/1198:1209,
1/c/1454:1458
No text annotation
homologous
J3_8C3A_040
NA
J3_8CKU_0181/c/1215:1220,
1/c/1263:1267,
1/c/1442:1448
No text annotation
homologous
J3_4V88_038
NA
J3_8CKU_0191/c/1283:1288,
1/c/1327:1332,
1/c/1419:1424
No text annotation
homologous
J3_4V88_039
NA
J3_8CKU_0441/c/1293:1294,
1/c/1303:1306,
1/c/1318:1322
No text annotation
homologous
J3_8CRE_083
J3_76043.3
J3_8CKU_0201/c/1336:1338,
1/c/1386:1389,
1/c/1412:1415
No text annotation
homologous
J3_4V88_040
NA
J3_8CKU_0431/c/1336:1338,
1/c/1386:1391,
1/c/1407:1415
No text annotation
homologous
J3_8C3A_086
NA
J3_8CKU_0211/c/1470:1474,
1/c/1533:1540,
1/c/1571:1574
No text annotation
homologous
J3_4V88_041
NA
J4_8CKU_0011/AA/112:113,
1/AA/267:272,
1/AA/293:299,
1/AA/316:319
No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_8CKU_0021/AA/185:189,
1/AA/205:208,
1/AA/212:214,
1/AA/226:231
No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_8CKU_0031/AA/1451:1457,
1/AA/1475:1476,
1/AA/1877:1880,
1/AA/2352:2353
No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_8CKU_0041/AA/1492:1496,
1/AA/1520:1525,
1/AA/1614:1615,
1/AA/1829:1836
No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_8CKU_0051/AA/1674:1675,
1/AA/1693:1694,
1/AA/1752:1753,
1/AA/1772:1773
No text annotation
homologous
J4_8C3A_005
NA
J4_8CKU_0061/AA/2130:2134,
1/AA/2146:2150,
1/AA/2186:2190,
1/AA/2317:2322
No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_8CKU_0071/AA/2192:2194,
1/AA/2248:2249,
1/AA/2267:2276,
1/AA/2310:2315
No text annotation
homologous
J4_8P9A_018
J4_93343.1
J4_8CKU_0081/AA/2654:2658,
1/AA/2712:2714,
1/AA/2741:2742,
1/AA/2751:2753
No text annotation
J4_8CKU_0091/AA/3010:3012,
1/AA/3042:3043,
1/AA/3098:3100,
1/AA/3134:3136
No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_8CKU_0151/Bb/7:10,
1/Bb/25:27,
1/Bb/43:49,
1/Bb/65:66
tRNA junction
homologous
J4_6CFJ_015
J4_70449.29
J4_8CKU_0111/Cc/7:10,
1/Cc/26:28,
1/Cc/44:50,
1/Cc/66:67
tRNA junction
homologous
J4_7MRL_001
J4_70449.29
J4_8CKU_0121/c/99:107,
1/c/307:309,
1/c/357:361,
1/c/383:384
No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_8CKU_0161/c/137:141,
1/c/173:182,
1/c/203:204,
1/c/263:266
No text annotation
J4_8CKU_0141/c/622:624,
1/c/975:980,
1/c/1021:1032,
1/c/1103:1104
No text annotation
homologous
J4_8C3A_022
NA
J5_8CKU_0011/AA/20:22,
1/CC/35:42,
1/CC/102:107,
1/CC/115:116,
1/CC/137:139
No text annotation
homologous
J5_8C3A_001
NA
J5_8CKU_0021/AA/658:663,
1/AA/799:802,
1/AA/941:944,
1/AA/1375:1376,
1/AA/1431:1437
No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_8CKU_0031/AA/675:678,
1/AA/702:706,
1/AA/713:721,
1/AA/749:751,
1/AA/782:787
No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_8CKU_0041/AA/1906:1914,
1/AA/1938:1939,
1/AA/2109:2110,
1/AA/2114:2122,
1/AA/2331:2333
No text annotation
homologous
J5_8C3A_004
NA
J5_8CKU_0051/AA/2399:2406,
1/AA/2815:2823,
1/AA/2867:2876,
1/AA/2951:2957,
1/AA/2975:2980
No text annotation
J5_8CKU_0061/AA/2416:2419,
1/AA/2611:2614,
1/AA/2627:2628,
1/AA/2650:2651,
1/AA/2798:2804
No text annotation
homologous
J5_8C3A_006
NA
J5_8CKU_0071/c/31:35,
1/c/473:479,
1/c/509:514,
1/c/543:546,
1/c/592:595
No text annotation
homologous
J5_8C3A_018
NA
J5_8CKU_0081/c/31:35,
1/c/473:479,
1/c/509:516,
1/c/536:546,
1/c/592:595
No text annotation
J5_8CKU_0091/c/54:57,
1/c/90:97,
1/c/386:388,
1/c/409:411,
1/c/422:426
No text annotation
homologous
J5_8C3A_020
NA
J6_8CKU_0011/AA/22:27,
1/AA/58:68,
1/AA/75:79,
1/AA/106:110,
1/AA/321:331,
1/CC/32:35
No text annotation
J6_8CKU_0021/AA/2416:2419,
1/AA/2611:2614,
1/AA/2627:2628,
1/AA/2650:2653,
1/AA/2754:2765,
1/AA/2793:2804
No text annotation
J7_8CKU_0011/AA/949:954,
1/AA/967:968,
1/AA/1114:1117,
1/AA/1141:1146,
1/AA/1157:1161,
1/AA/1338:1339,
1/AA/1365:1370
No text annotation

Problematic loops

#loop idProblemSequence
J3_8CKU_003No text annotation
J3_8CKU_009No text annotation
J3_8CKU_041No text annotation
J3_8CKU_042No text annotation
J4_8CKU_010No text annotation
J4_8CKU_013No text annotation

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