HL_8CKU_010

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CKU_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1113

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CKU|1|AA|A|357
8CKU|1|AA|G|358
8CKU|1|AA|U|359
8CKU|1|AA|G|360
8CKU|1|AA|A|361
8CKU|1|AA|U|362

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain GG

60S ribosomal protein L4-A

Chain V

60S ribosomal protein L37-A

Chain X

60S ribosomal protein L39